View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16418_high_2 (Length: 418)
Name: NF16418_high_2
Description: NF16418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16418_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 269 - 402
Target Start/End: Original strand, 9305345 - 9305478
Alignment:
| Q |
269 |
aatcaagatctgctccatataggatccctctatttacttaacaattttaacaaattccaaaactctcaaatcataactaaacaaaacaactttcaattaa |
368 |
Q |
| |
|
||||||||| |||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9305345 |
aatcaagatatgctgcatataggctccctccatttacttaacgattttaacaaattccaaaactctcaaatcataactaaacaaaataactttcaattaa |
9305444 |
T |
|
| Q |
369 |
aattacctcagaaacccaacattgccaaacaact |
402 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
9305445 |
aattacctcagaaacccaacactgccaaacaact |
9305478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 9302532 - 9302611
Alignment:
| Q |
186 |
atccatagaaaa-tgccatatgaaaatatcaaatataaactaactctttttctttaatctcttaacctccgcacaactta |
264 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9302532 |
atccatagaaaaatgccatatgaaaatatcaaatataaactaactatttttctttaatctcataacctccacacaactta |
9302611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 14655969 - 14655839
Alignment:
| Q |
26 |
gatccaattgagtattcccttaatcattttagtgaaccacttgaaacacatctcttctatgatagagtgatgactgcgctttgaagctctgtcacacatg |
125 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| |||||||| || | |
|
|
| T |
14655969 |
gatccaattgagtattcccttaatcattt-agtgaaccacttgaaacacatctcttctatgatagggtggtgattgcgctttgaagttctgtcacgcaag |
14655871 |
T |
|
| Q |
126 |
ttttgtactctaaaagtgacatatcctccgtt |
157 |
Q |
| |
|
|| |||||||||||| ||| ||| ||||||| |
|
|
| T |
14655870 |
ttgtgtactctaaaattgatataatctccgtt |
14655839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University