View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16418_high_8 (Length: 231)

Name: NF16418_high_8
Description: NF16418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16418_high_8
NF16418_high_8
[»] chr3 (1 HSPs)
chr3 (1-216)||(8523271-8523486)
[»] chr2 (2 HSPs)
chr2 (1-213)||(12248625-12248837)
chr2 (1-166)||(11994139-11994304)
[»] chr5 (7 HSPs)
chr5 (73-215)||(41713271-41713413)
chr5 (1-213)||(42129048-42129260)
chr5 (58-213)||(42117983-42118138)
chr5 (73-213)||(34240261-34240401)
chr5 (121-216)||(41571732-41571827)
chr5 (1-213)||(34232518-34232730)
chr5 (1-213)||(42123663-42123875)
[»] chr4 (1 HSPs)
chr4 (1-213)||(11118308-11118520)
[»] chr6 (2 HSPs)
chr6 (50-213)||(24141043-24141206)
chr6 (121-213)||(25522747-25522839)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 8523271 - 8523486
Alignment:
Q  1 tcttctatgttgttgctcccaagatttagaaacattaaccgtttacagagagacagggatttaggaatatgaccttctaattggttgccatagagattca 100  Q
    ||||||||  ||||| | ||||| |||| |||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8523271 tcttctattatgttgttgccaaggtttaaaaacatcaaccctttacagagagacaaggatttaggaatatgaccttctaattggttgccatagagattca 8523370  T
Q  101 gagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaag 200  Q
    |||||| |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||||| |||    
T  8523371 gagtctcaagttcactttcttttgaaaagttacttggcaaagttccatgaaatttgttcatttgtagatccaaaacttcaaggtatgataaattagcaag 8523470  T
Q  201 acattgtggaatggtg 216  Q
    ||||||||||||||||    
T  8523471 acattgtggaatggtg 8523486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 12248625 - 12248837
Alignment:
Q  1 tcttctatgttgttgctcccaagatttagaaacattaaccgtttacagagagacagggatttaggaatatgaccttctaattggttgccatagagattca 100  Q
    |||||||| |||||||| || || ||||||||| | |||| |||||||||||||| |||| |||||||||| |||||||||||||||||||| |||||||    
T  12248625 tcttctattttgttgctgccgaggtttagaaacttcaaccctttacagagagacaaggatctaggaatatggccttctaattggttgccataaagattca 12248724  T
Q  101 gagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaag 200  Q
    |||||| |||||||||    ||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||||||||| || |||    
T  12248725 gagtctcaagtgcactcatctttgagaagttacttggcaaagtgccatgaaatttgttcatttgtagattcaaaacttgaagggatgataaatcagcaag 12248824  T
Q  201 acattgtggaatg 213  Q
    |||||||||||||    
T  12248825 acattgtggaatg 12248837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 11994304 - 11994139
Alignment:
Q  1 tcttctatgttgttgctcccaagatttagaaacattaaccgtttacagagagacagggatttaggaatatgaccttctaattggttgccatagagattca 100  Q
    |||||||| |||||||| || || ||||||||| | |||| |||||||||||  | |||| |||||||||| ||||||||||||||||||||||||||||    
T  11994304 tcttctattttgttgctgccgaggtttagaaacttcaaccctttacagagagttaaggatctaggaatatggccttctaattggttgccatagagattca 11994205  T
Q  101 gagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgta 166  Q
    |||||| ||||||||| || ||||| |||||||||||||||||||||||| |  ||||||||||||    
T  11994204 gagtctcaagtgcactctcctttgagaagttacttggcaaagtgccatgacatgtgttcatttgta 11994139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 41713413 - 41713271
Alignment:
Q  73 ccttctaattggttgccatagagattcagagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatcca 172  Q
    |||||||||| ||||||||||||||| ||||| | |||  |||| || |||||||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  41713413 ccttctaatttgttgccatagagatttagagtatgaagctcactgtcctttgaaaagttacttggcaaagtgccataaaatttgttcatttgtagatcca 41713314  T
Q  173 aaacttcaagggatgataaattagtaagacattgtggaatggt 215  Q
    ||||||||||| |||||||||||| ||||||||||||||||||    
T  41713313 aaacttcaaggtatgataaattagcaagacattgtggaatggt 41713271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42129048 - 42129260
Alignment:
Q  1 tcttctatgttgttgctcccaagatttagaaacattaaccgtttacagagagacagggatttaggaatatgaccttctaattggttgccatagagattca 100  Q
    ||||||||||||||||| || || |||||||||   |||  | |||||||||||| |||||| |||| |||||||||||||| |||||||| |||||| |    
T  42129048 tcttctatgttgttgcttccgaggtttagaaactccaactttgtacagagagacaaggattttggaaaatgaccttctaatttgttgccatggagattta 42129147  T
Q  101 gagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaag 200  Q
    |||||| |||  |||  |  | ||||||||||||||||||||| |||| |||  | |||||||| ||||||||||||| |||| | ||| |||||| |||    
T  42129148 gagtctgaagctcacagtactctgaaaagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaaggaacgatgaattagcaag 42129247  T
Q  201 acattgtggaatg 213  Q
    |||||||||||||    
T  42129248 acattgtggaatg 42129260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 58 - 213
Target Start/End: Original strand, 42117983 - 42118138
Alignment:
Q  58 gatttaggaatatgaccttctaattggttgccatagagattcagagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgt 157  Q
    ||||||||||| |||||||||||||||||||||| |||||| ||||||| |||  |||  || | ||||||||||||||||||||| |||| |||  | |    
T  42117983 gatttaggaatctgaccttctaattggttgccatggagatttagagtctgaagcacacagtcctctgaaaagttacttggcaaagttccataaaatctat 42118082  T
Q  158 tcatttgtaaatccaaaacttcaagggatgataaattagtaagacattgtggaatg 213  Q
    ||||||| ||||||||||||| ||||  |||| |||||| ||||||||||||||||    
T  42118083 tcatttgcaaatccaaaacttgaaggattgatgaattagcaagacattgtggaatg 42118138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 213
Target Start/End: Complemental strand, 34240401 - 34240261
Alignment:
Q  73 ccttctaattggttgccatagagattcagagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatcca 172  Q
    ||||||||||||||| ||| ||||||||||||  |||||  |||    |||||||||||| | ||||||||||||| ||| ||||||||||||| |||||    
T  34240401 ccttctaattggttgtcattgagattcagagtaataagtttactggactttgaaaagttattaggcaaagtgccataaaagttgttcatttgtagatcca 34240302  T
Q  173 aaacttcaagggatgataaattagtaagacattgtggaatg 213  Q
    ||| || |||||||| |||||||| ||||||||||||||||    
T  34240301 aaatttgaagggatggtaaattagcaagacattgtggaatg 34240261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 41571827 - 41571732
Alignment:
Q  121 tttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaagacattgtggaatggtg 216  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||| |||||||||||| || | |||||| ||||||||||||    
T  41571827 tttgaaaagttacttggtaaagtgccataaaatttgttcatttgtaaatccaaaacttgaagggatgataagtttgcaagacaatgtggaatggtg 41571732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 34232730 - 34232518
Alignment:
Q  1 tcttctatgttgttgctcccaagatttagaaacattaaccgtttacagagagacagggatttaggaatatgaccttctaattggttgccatagagattca 100  Q
    |||||||| |||||||| || || |||||||||   | |  ||||||| | ||||  |||||||| | |||||||||||  |||||||||| ||||||||    
T  34232730 tcttctattttgttgctgccgaggtttagaaactccagcgttttacagtgggacaaagatttaggcaaatgaccttctatatggttgccattgagattca 34232631  T
Q  101 gagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaag 200  Q
    || ||  |||  |||| |  ||||| |||||||||||||||| ||||| |||  | |||||||||| |||||| ||||  |||||||||||||||| |||    
T  34232630 gactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgtagggatgataaattagcaag 34232531  T
Q  201 acattgtggaatg 213  Q
    | |||||||||||    
T  34232530 atattgtggaatg 34232518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 42123663 - 42123875
Alignment:
Q  1 tcttctatgttgttgctcccaagatttagaaacattaaccgtttacagagagacagggatttaggaatatgaccttctaattggttgccatagagattca 100  Q
    |||||||| |||||||| || || |||||||||  ||||  ||||||| |||||| |||||| |||| ||| |||||||| |||||||| ||||| ||||    
T  42123663 tcttctattttgttgctaccgaggtttagaaactctaactctttacagcgagacaaggattttggaaaatggccttctaactggttgccgtagaggttca 42123762  T
Q  101 gagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaag 200  Q
    ||||   ||    ||  |  ||||||||||||||||||||||| |||| |||| |||||||||||| || |||||||| |||||||| | | | || ||     
T  42123763 gagtgacaatactacagttctttgaaaagttacttggcaaagtaccataaaacatgttcatttgtagattcaaaacttgaagggatggtgattcagcaaa 42123862  T
Q  201 acattgtggaatg 213  Q
    |||||||||||||    
T  42123863 acattgtggaatg 42123875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 11118308 - 11118520
Alignment:
Q  1 tcttctatgttgttgctcccaagatttagaaacattaaccgtttacagagagacagggatttaggaatatgaccttctaattggttgccatagagattca 100  Q
    ||||||||  ||||||| || || |||||||||   |||  ||||||  |||||| |||||| |||| ||| |||||||| |||||||||||||| ||||    
T  11118308 tcttctattctgttgctgccgaggtttagaaacgccaactttttacaccgagacaaggattttggaaaatggccttctaactggttgccatagaggttca 11118407  T
Q  101 gagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaag 200  Q
    ||| |  ||    |||||| |||||||||||||| ||||||||||||||||| ||||||||||||| || |||||| | |||| ||| | | | || |||    
T  11118408 gagacacaatacgactttcctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatggtgattcagcaag 11118507  T
Q  201 acattgtggaatg 213  Q
    |||||||||||||    
T  11118508 acattgtggaatg 11118520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 24141043 - 24141206
Alignment:
Q  50 gagacagggatttaggaatatgaccttctaattggttgccatagagattcagagtcttaagtgcactttcttttgaaaagttacttggcaaagtgccatg 149  Q
    |||||| |||||| |||| ||| |||||||| | ||| ||||||| ||||||||| | || | || | || |||||||||||||||||||||||||||||    
T  24141043 gagacaaggatttcggaaaatggccttctaacttgttaccatagaaattcagagtgtcaattccattgtcctttgaaaagttacttggcaaagtgccatg 24141142  T
Q  150 aaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaagacattgtggaatg 213  Q
    |||  |||| ||||||| || |||||||  |||||||| | ||| || ||||||||||||||||    
T  24141143 aaatgtgttgatttgtagattcaaaactcgaagggatggtgaatcagaaagacattgtggaatg 24141206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 25522839 - 25522747
Alignment:
Q  121 tttgaaaagttacttggcaaagtgccatgaaacttgttcatttgtaaatccaaaacttcaagggatgataaattagtaagacattgtggaatg 213  Q
    ||||||||||||||||||||||||||||||||  | |||||||||| || |||||||| |||||||| | | | || ||||||||||||||||    
T  25522839 tttgaaaagttacttggcaaagtgccatgaaatctattcatttgtagattcaaaacttgaagggatgttgattcagcaagacattgtggaatg 25522747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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