View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16418_low_3 (Length: 347)

Name: NF16418_low_3
Description: NF16418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16418_low_3
NF16418_low_3
[»] chr5 (7 HSPs)
chr5 (22-338)||(16087911-16088227)
chr5 (18-265)||(16085061-16085309)
chr5 (18-206)||(3627797-3627982)
chr5 (24-133)||(3640865-3640975)
chr5 (18-122)||(14837182-14837287)
chr5 (156-232)||(14837106-14837181)
chr5 (185-249)||(3627780-3627845)
[»] chr1 (3 HSPs)
chr1 (18-266)||(19033617-19033866)
chr1 (59-209)||(38968510-38968659)
chr1 (60-116)||(28830745-28830801)
[»] chr4 (3 HSPs)
chr4 (18-304)||(14058966-14059255)
chr4 (18-267)||(23544603-23544850)
chr4 (18-177)||(22462348-22462508)
[»] chr2 (4 HSPs)
chr2 (18-273)||(26973292-26973548)
chr2 (18-281)||(7504925-7505189)
chr2 (18-265)||(26968772-26969021)
chr2 (82-176)||(17364670-17364761)
[»] chr3 (3 HSPs)
chr3 (20-281)||(53731143-53731402)
chr3 (18-265)||(53726677-53726922)
chr3 (61-164)||(42872017-42872120)
[»] chr8 (5 HSPs)
chr8 (18-304)||(38643570-38643848)
chr8 (18-265)||(8263403-8263647)
chr8 (136-304)||(5659718-5659887)
chr8 (135-250)||(21419002-21419118)
chr8 (18-68)||(32791812-32791863)
[»] chr6 (1 HSPs)
chr6 (18-232)||(19229541-19229753)
[»] chr7 (1 HSPs)
chr7 (18-180)||(47204848-47205011)
[»] scaffold0427 (2 HSPs)
scaffold0427 (33-209)||(5731-5906)
scaffold0427 (185-304)||(5856-5968)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 22 - 338
Target Start/End: Complemental strand, 16088227 - 16087911
Alignment:
Q  22 ggacctgctgtatcctggggagtttgcgcacattgaac-ggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaattttg 120  Q
    ||||||||||||||| ||||||||||||||||||||   ||||||||||||||| || |||||||||| ||  |||||||||||||||||||||||||||    
T  16088227 ggacctgctgtatcc-ggggagtttgcgcacattgatgtggataaattccaaggacaatcttcgtgacaccctaggttaatactaacgtgttcaattttg 16088129  T
Q  121 caggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16088128 caggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatt 16088029  T
Q  221 tgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatccgtgtaactgtaaccgcaagttaaagaccttcttctacaa 320  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16088028 tgaagttgcggtgttgcggttactgtttacgcatcaggtacaacaatcttggaatttatccctgtaactgtaaccgcaagttaaagaccttcttctacaa 16087929  T
Q  321 ggtgtcccatgaaatatt 338  Q
    ||||||||||||||||||    
T  16087928 ggtgtcccatgaaatatt 16087911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 16085309 - 16085061
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||||||| |||||||||||||||| |||||||  |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  16085309 agaaggacctgctgtgtcctggggagtttgcgtacattgaggcggataaattccaaggacagtcttcgtgacgcctgaggttaatactaacgtgttcaat 16085210  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttat 216  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  16085209 gttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaaattgcggtggctgcgttgttatttgaagatgcggttgccgattat 16085110  T
Q  217 tatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaaca 265  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  16085109 tatttgaagttgtggtgttgcggttactgtttacgcatcaggtacaaca 16085061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 3627982 - 3627797
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||| || ||||||| |||||||||||||||||| |||||||||||||||| |||| ||| |||||||||| |||||||||||||||    ||    
T  3627982 agaaggacctgttgaatcctggagagtttgcgcacattgaagcggataaattccaaggacagtattcctgacgcctcaagttaatactaacgtg----at 3627887  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggt 206  Q
    ||| ||||||||||||||||||||||||||||||| ||||| ||||||| | ||||||||||| ||| |||| |||||| ||| ||||||    
T  3627886 tttacaggtttactttctagtttgttttgcagaatttggttcgttgttatttgaagttgcggttgctacgttattatttaaagttgcggt 3627797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 133
Target Start/End: Original strand, 3640865 - 3640975
Alignment:
Q  24 acctgctgtatcctggggagtttgcgcacattgaac-ggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaattttgca 122  Q
    ||||| || ||||||||||||||||||| |||||   ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  3640865 acctgttgaatcctggggagtttgcgcatattgaggaggataaattccaaggacagtcctcgtgacgcctcaggttaatactaacgtgttcaatcttgca 3640964  T
Q  123 ggtttactttc 133  Q
    |||||||||||    
T  3640965 ggtttactttc 3640975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 14837287 - 14837182
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||| ||| |||||||||| |||||||||||||||||  |||| ||||||||| | ||| |||| ||| ||||||||||||||||||||||||||||    
T  14837287 agaaggatctgatgtatcctggagagtttgcgcacattgaggcggacaaattccaatgacagccttcatgatgcctcaggttaatactaacgtgttcaat 14837188  T
Q  117 tttgca 122  Q
    ||||||    
T  14837187 tttgca 14837182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 14837181 - 14837106
Alignment:
Q  156 tttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggt 232  Q
    |||||||||| |||||||||  ||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||    
T  14837181 tttgttgttattcgaagttgtagtgactgagttgttatttgaagttgcggttgccggttattattt-aagttgcggt 14837106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 3627845 - 3627780
Alignment:
Q  185 cgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtgttgcggttaccgttta 249  Q
    ||||||||||||||| |||||||||   |||||||||| ||||||||||||||||||||| |||||    
T  3627845 cgttgttatttgaagttgcggttgctacgttattatttaaagttgcggtgttgcggttactgttta 3627780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 19033866 - 19033617
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19033866 agaaggacctgttgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtgttcaat 19033767  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttat 216  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  19033766 tttgcaggtttactgtctagtttgttttgcagaatctggttcgttgttactcgaagttgcggtggctgcgttgttatttgaagttgcggttgccggatat 19033667  T
Q  217 tatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaa 266  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||||||||||    
T  19033666 tatttaaagttgtcgtgttgcggttactgtttacgcatcaggtacaacaa 19033617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 209
Target Start/End: Original strand, 38968510 - 38968659
Alignment:
Q  59 cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatctggttt 158  Q
    ||||||||||  |||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||  | |||||||||| ||||     
T  38968510 cggataaattttaaggacagtcttcgtgacgcctcaggttaatactaacatgttcaa-tttgcaggtttactttctagttaatcttgcagaatccggttc 38968608  T
Q  159 gttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgc 209  Q
    ||||||| | ||||||||||| |||  || ||||||||||| ||| |||||    
T  38968609 gttgttatttgaagttgcggttgctttgtagttatttgaagttgctgttgc 38968659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 28830801 - 28830745
Alignment:
Q  60 ggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||||||  ||||| || |||||||| |||||||||||||||||||||||    
T  28830801 ggataaattccaagaacagtcctcatgacgccttaggttaatactaacgtgttcaat 28830745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 14058966 - 14059255
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||    
T  14058966 agaaggacctgctgtatcctagggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgcattcaat 14059065  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||||| || ||||| ||||||| |||| ||||||||| | ||||    
T  14059066 tttgcaggtttactttgtagtttgttttgcagaatctggttcgttgttatttgaagttgcgatgactgcgatgttattcgaagttgcggttgctgcgtta 14059165  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatcc-gtgtaactgtaaccgcaagttaa 304  Q
    ||| || |||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||  | ||||||| ||||||||||||    
T  14059166 ttacttaaagttgcggtgttgtggttgctgtttacacatcaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaa 14059255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 23544603 - 23544850
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaac-ggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||| ||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||||||||||    ||    
T  23544603 agaaggatctgctgtatcctggggagtttgcgcacattgaggtggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtg----at 23544698  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||| |||||||||||||||||||||||||||||||| |||| | ||||| | ||||||| |||||||| | |||| || |||| ||||||||| | ||||    
T  23544699 tttacaggtttactttctagtttgttttgcagaatcaggttcggtgttatttgaagttgtggtggctggggtgttgttcgaagttgcggttgctgcgtta 23544798  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaat 267  Q
    |||  | |||||||||||||||||||   |||||| ||| ||||||||||||    
T  23544799 ttacctaaagttgcggtgttgcggttgatgtttacacataaggtacaacaat 23544850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 22462348 - 22462508
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||| || |||||||||||||| |||||| |||  |||||||||||||| | ||||| ||||||||||||| |||||||||||||| ||||||    
T  22462348 agaaggacctgttgaatcctggggagtttccgcacactgaggcggataaattccaaagacagtcctcgtgacgcctcatgttaatactaacgtattcaat 22462447  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcg 177  Q
    ||| || ||||||||||| ||| || ||| |||||||||||  |||||| | |||||||||    
T  22462448 tttacaagtttactttctggttcgtcttgtagaatctggttcattgttatttgaagttgcg 22462508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 26973548 - 26973292
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||| ||||||||||  ||||||||||||||||  ||||||||| |||||| ||||||| |||||||||||||||||||||||||  ||||||    
T  26973548 agaaggacctgttgtatcctggaaagtttgcgcacattgaggcggataaat-ccaaggacagtctttgtgacgcctcaggttaatactaacgcattcaat 26973450  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||||| |||| ||||||||| | ||||    
T  26973449 tttgcaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgtta 26973350  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttgga 273  Q
    ||| || ||||||||||||||||||| | |||||| |||||||||||| |||||||||    
T  26973349 ttacttaaagttgcggtgttgcggttgctgtttacacatcaggtacaagaatcttgga 26973292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 7505189 - 7504925
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||| ||||||||||||| | |||||||||| |||||  |||||||||| ||||| ||||||||||||| |||||||||||||||||||  ||||||    
T  7505189 agaaggatctgctgtatcctgcg-agtttgcgcatattgaggcggataaatttcaaggacagtcttcgtgacacctcaggttaatactaacgcattcaat 7505091  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||||| |||| ||||||||| | ||||    
T  7505090 tttgcaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgcggtggctgcggtgttattcgaagttgcggttgctgcgtta 7504991  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatcc 281  Q
    ||| || |||||||||||||  |||| | |||||| ||||||||||||||||||| ||||||||||    
T  7504990 ttacttaaagttgcggtgttatggttgctgtttacacatcaggtacaacaatcttagaatttatcc 7504925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 26969021 - 26968772
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||||||||||||||||| |||||| |||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||    
T  26969021 agaaggacctgctgtatcctggggattttgcgtacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacacattcaat 26968922  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||||| | |||||| ||||||||||  |||||||  ||| ||||||||| |  ||     
T  26968921 tttgcaggtttactttctagtttgttttgcagaatatggttcggtgttatttgaagttccggtggctgctgtgttattcaaagttgcggttgctgcattg 26968822  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaaca 265  Q
    ||| || ||||||||||||||||||| | |||||| ||||||||||||||    
T  26968821 ttacttaaagttgcggtgttgcggttgctgtttactcatcaggtacaaca 26968772  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 17364761 - 17364670
Alignment:
Q  82 tcgtgacgcctcaggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgc 176  Q
    |||||| || |||| ||||||| ||||| | |||||||||| ||||||||||||||| |   |||||||||||||| ||||||| | ||||||||    
T  17364761 tcgtgatgcttcagtttaataccaacgtttccaattttgcaagtttactttctagttcg---tgcagaatctggttcgttgttatttgaagttgc 17364670  T

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Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 20 - 281
Target Start/End: Complemental strand, 53731402 - 53731143
Alignment:
Q  20 aaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaattt 118  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||    ||||    
T  53731402 aaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtg----attt 53731307  T
Q  119 tgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttatt 217  Q
    | ||||||| |||||||||||||||||||||||| ||||   ||||| | |||||||||||||||||| |||| ||  ||| ||||||||| | ||||||    
T  53731306 tacaggtttcctttctagtttgttttgcagaatcaggttccgtgttatttgaagttgcggtggctgcggtgttcttcaaagttgcggttgctgtgttatt 53731207  T
Q  218 atttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatcc 281  Q
    | || ||||||||||||||||||| | |||||| ||| ||||||||||||||||||||||||||    
T  53731206 acttaaagttgcggtgttgcggttgctgtttacacataaggtacaacaatcttggaatttatcc 53731143  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 53726922 - 53726677
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||    |||    
T  53726922 agaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgt----aat 53726827  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||| |||||||| ||||||||||||||||||||||| ||||   ||||| | ||||||||||||| |||| |||| ||  ||| ||||||||| | ||||    
T  53726826 tttacaggtttaatttctagtttgttttgcagaatcaggttccgtgttatttgaagttgcggtggttgcggtgttcttcaaagttgcggttgctgtgtta 53726727  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaaca 265  Q
    ||| || ||||||||||||||||||| | |||||| ||| ||||||||||    
T  53726726 ttacttaaagttgcggtgttgcggttgctgtttacacataaggtacaaca 53726677  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 42872017 - 42872120
Alignment:
Q  61 gataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaattttgcaggtttactttctagtttgttttgcagaatctggtttgt 160  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| | | | ||||||||||||||    
T  42872017 gataaattccaatggcagtcttcgtgacgcctcaggttaatactaacgtattcaattttacaggtttactttctaatttatctcgtagaatctggtttgt 42872116  T
Q  161 tgtt 164  Q
    ||||    
T  42872117 tgtt 42872120  T

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Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 38643848 - 38643570
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||||||||||||||||||||  ||||||    
T  38643848 agaaggacctgctgtatcctggggagtttgcgcacattgaggcggataaatttcaaggacagtcttcgtgacgcctcaggttaatactaacgcattcaat 38643749  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||         ||||||| |||| ||||||||| | ||||    
T  38643748 tttgcaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgcgg---------tgttattcgaagttgcggttgctgcgtta 38643658  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatccgtgt--aactgtaaccgcaagttaa 304  Q
    ||| || ||||||||||||||||||| | ||||||||||   |||||||||||||||||||||||| | |  |||||| ||||||||||||    
T  38643657 ttacttaaagttgcggtgttgcggttgcggtttacgcat---gtacaacaatcttggaatttatccttttaaaactgtgaccgcaagttaa 38643570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 8263403 - 8263647
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||| || |||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||    ||    
T  8263403 agaaggacctgttgaatcctggggaatttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtg----at 8263498  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||| || |||||||||||||||||||||||||||||||||| | ||||| | |||||||||||| | ||| | ||||| |||| ||||||||| | ||||    
T  8263499 tttacatgtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgcggtgaccgcggt-ttattcgaagttgcggttgctgcgtta 8263597  T
Q  216 ttatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaaca 265  Q
    ||| || |||||||| ||||||||||   |||||| ||||||||||||||    
T  8263598 ttacttaaagttgcgatgttgcggttgttgtttacacatcaggtacaaca 8263647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 304
Target Start/End: Original strand, 5659718 - 5659887
Alignment:
Q  136 gtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgtt 235  Q
    ||||||||||||||| |||||| ||||||  ||||||||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  5659718 gtttgttttgcagaaactggttcgttgtttttcgaagttggggtggctacgttgttatttgaagttgcggttgcctgttattatttgaagttgcggtgtt 5659817  T
Q  236 gcggttaccgtttacgcatcaggtacaacaatcttggaatttatcc-gtgtaactgtaaccgcaagttaa 304  Q
    |||||| | |||||||||||||||||||||||||||||||||||||  | ||||||| ||||||||||||    
T  5659818 gcggttgctgtttacgcatcaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaa 5659887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 250
Target Start/End: Complemental strand, 21419118 - 21419002
Alignment:
Q  135 agtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gttattatttgaagttgcggtg 233  Q
    |||||||||||| |||||||||| ||||||| | |||||||||| ||||||||||||||| |||| || | |||  | |||||||||| |||||| ||||    
T  21419118 agtttgttttgcggaatctggttcgttgttatttgaagttgcggcggctgcgttgttattggaagttgtgattgttgcgttattatttaaagttgtggtg 21419019  T
Q  234 ttgcggttaccgtttac 250  Q
    |||||||| | ||||||    
T  21419018 ttgcggttgctgtttac 21419002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 32791812 - 32791863
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattga-acggataaatt 68  Q
    |||||||||| ||||||| ||||||||||||||| ||||| |||||||||||    
T  32791812 agaaggacctactgtatcgtggggagtttgcgcatattgagacggataaatt 32791863  T

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Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 19229753 - 19229541
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||| |||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||    ||    
T  19229753 agaaggacctgttgtatcttggggagtttgcgcacattgaggcggataaattccaaggacagtcttcgtgacgcctcaggttaatactaacgtg----at 19229658  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgccg-gtta 215  Q
    ||| ||||||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||  |||| || |||| ||||||||| | ||||    
T  19229657 tttacaggtttactttctagtttgttttgcagaatctggttcggtgttatttgaagttgcggtggctgcagtgttcttcgaagttgcggttgctgcgtta 19229558  T
Q  216 ttatttgaagttgcggt 232  Q
    ||| || ||||||||||    
T  19229557 ttacttaaagttgcggt 19229541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 47204848 - 47205011
Alignment:
Q  18 agaaggacctgctgtatcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaat 116  Q
    ||||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||    
T  47204848 agaaggacctgctgtatcctgggaagtttgcgcacattgaggcggataaattctaaggacagtcttcgtgacgcctcaggttaatactaacgtattcaat 47204947  T
Q  117 tttgcaggtttactttctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtg 180  Q
    ||||||| |||||||||||||||||||||||||||||| || | ||||| | ||||||||||||    
T  47204948 tttgcagatttactttctagtttgttttgcagaatctgattcgatgttatttgaagttgcggtg 47205011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 33 - 209
Target Start/End: Original strand, 5731 - 5906
Alignment:
Q  33 atcctggggagtttgcgcacattgaa-cggataaattccaagggcagtcttcgtgacgcctcaggttaatactaacgtgttcaattttgcaggtttactt 131  Q
    |||||| |||||| |||||||||||  |||||||||||||| | |||||||||||||||||||||||||| ||| |   || ||||||||||||||| ||    
T  5731 atcctgaggagttagcgcacattgaggcggataaattccaatgacagtcttcgtgacgcctcaggttaatgctatccattt-aattttgcaggtttaatt 5829  T
Q  132 tctagtttgttttgcagaatctggtttgttgttactcgaagttgcggtggctgcgttgttatttgaagatgcggttgc 209  Q
    |||||||||||||||||||||| ||| ||||||| | ||||||||||| || | ||| |||||||||| |||||||||    
T  5830 tctagtttgttttgcagaatctagttcgttgttatttgaagttgcggttgccg-gttattatttgaagttgcggttgc 5906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 185 - 304
Target Start/End: Original strand, 5856 - 5968
Alignment:
Q  185 cgttgttatttgaagatgcggttgccggttattatttgaagttgcggtgttgcggttaccgtttacgcatcaggtacaacaatcttggaatttatcc-gt 283  Q
    ||||||||||||||| ||||||||||||||||||||||||        ||||||||| | |||||| ||| ||||||||||||||||||||||||||  |    
T  5856 cgttgttatttgaagttgcggttgccggttattatttgaa--------gttgcggttgctgtttacacattaggtacaacaatcttggaatttatccttt 5947  T
Q  284 gtaactgtaaccgcaagttaa 304  Q
     ||||||| ||||||||||||    
T  5948 ataactgtgaccgcaagttaa 5968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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