View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16419_high_1 (Length: 693)
Name: NF16419_high_1
Description: NF16419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16419_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 219 - 491
Target Start/End: Complemental strand, 43658678 - 43658406
Alignment:
| Q |
219 |
gttttgcaggaaatggctcgaatgatacgagaacatttgaaaaaattaatatatcttataatatttgaacatacaatttatctggaatgtgatgcatttt |
318 |
Q |
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| T |
43658678 |
gttttgcaggaaatggctcgaatgatacgagaacatttgaaaacattaatatatcttagaatatttgaacatacaatttatctggactgtgatgcatttt |
43658579 |
T |
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| Q |
319 |
ccaaacaagctttcaaagcaaagcaatatttgcatcaaggccatcttccttcttttggtctagaaatcatttatcaggtgcatgtactatgcttatttgg |
418 |
Q |
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| T |
43658578 |
ccaaacaaggtttccaagcaaagcaatatttgcatcaaggccatcttccttcttttggtctagaaatcatttatcaggtgcatgtactatgcttatttgg |
43658479 |
T |
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| Q |
419 |
agcatttggtgagagggggaattacacaataggttttgtaacaattatctccataaagtcccatttcaaataa |
491 |
Q |
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| T |
43658478 |
agcatttggtgagagggggaattacacaataggttttgtaacaattatctccataaagtcccatttcaaataa |
43658406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 43658920 - 43658678
Alignment:
| Q |
7 |
attctactattgtgaagctcagtaagttttcaagtaacttaatggnnnnnnnnttatggaatcaatatttccaaggtagctggtgatgcatccatatttg |
106 |
Q |
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| T |
43658920 |
attctactattgtgaagctcagtaagttttcaagtaacttaatggaaaaaaaattatggaatcaatatttccaaggtagctggtgatgcatccatatttg |
43658821 |
T |
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| Q |
107 |
catcttgttttatttaatatgtgcatgcatttttaggtgaattatatacaatgtttgtagtcttgtttgattttcatgtagattggatgactgcatttgt |
206 |
Q |
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| T |
43658820 |
catcttgttttatttaatatgtgcatgcatttttaggtgaattatatacaatgtttgtagtcttgtttgattttcatgtagatcggatgactgcatttgt |
43658721 |
T |
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| Q |
207 |
aagtcatgttttgttttgcaggaaatggctcgaatgatacgag |
249 |
Q |
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| T |
43658720 |
aagtcatgttttgttttgcaggaaatggctcgaatgatacgag |
43658678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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