View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16419_high_2 (Length: 539)
Name: NF16419_high_2
Description: NF16419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16419_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 52585133 - 52584618
Alignment:
| Q |
19 |
attttggcatgtgcagtgtatagtaatagtactcctccaagttagttt-gagctatcacatttatcttactgaatactagagctgcaatattcaaacatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52585133 |
attttggcatgtgcagtgtatagtaatagtactcctccaagttagttttgagctatcacatttatcttactgaatactagagctgcaatattcaaacatg |
52585034 |
T |
|
| Q |
118 |
aaacttgggatttgattgtgaccactgattatgctcaccaatgaatccactgctcaacctcaatagggcttcgtgcacctagtacggattcaccacttct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52585033 |
aaacttgggatttgattgtgaccactgattatgctcaccaatgaatccactgctcaacctcaatagggcttcgtgcacctagtacggattcaccacttct |
52584934 |
T |
|
| Q |
218 |
atgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584933 |
atgttaatgtcttattaactcatgtcttcagaatatatactatactagcttttttgctcaaatagtttcttcagtacgtaaaaaacagtgttgattcgat |
52584834 |
T |
|
| Q |
318 |
tcgattcgattccccctttcactccttttctctttttccataaaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgcttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52584833 |
tcgattcgattccccctttcactccttttctccttttccataaaaatctctcttctttcactgttctagagagatccacatcacaaaactcacatgcttc |
52584734 |
T |
|
| Q |
418 |
atttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagtttattttttcaatcactttctctcagacnnnnnnngctagc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
52584733 |
atttttccaattgagttgttcccttaagggacacaatacaatacaagtatagaactagtttatttattcaatcactttctctcagacaaaaaaagctagc |
52584634 |
T |
|
| Q |
518 |
tacaattgatgatgtc |
533 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
52584633 |
tacaattaatgatgtc |
52584618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University