View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16419_high_4 (Length: 305)
Name: NF16419_high_4
Description: NF16419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16419_high_4 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0259 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 13380247 - 13380524
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatccatgaatcaagaagcatatcaaatccaacgtcataatctatcattttcactt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
13380247 |
atcaactacaagaaaattaataaaacataataaatcttttcactcatccatgaatcaagaagtatatcaaattcaacgtcataacctatcattttcactt |
13380346 |
T |
|
| Q |
114 |
aaatcatggtcaagactagaacctttacctta----ag-cgctttccttccaagcaaaactctaaacccgtgttacatgattagtcttttcctcctctaa |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
13380347 |
aaatcatggtcaagactagaacccttaccttaccttagacgctttccttccaagcaaaactctaaacctgtgt-acatgattagtcttttcctcctctaa |
13380445 |
T |
|
| Q |
209 |
gtctatcctccaaatttgttgccacaatgcatgtacgattcttcacactaattataggtagtttgagaaactatctacc |
287 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13380446 |
gtttatcctccaaatttgttgccacaatgcatgtacgattcttcacactaattataggtagtttgagaaactatctacc |
13380524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 31654602 - 31654719
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
31654602 |
caactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaatccaacatcataatctatcattttcattta |
31654701 |
T |
|
| Q |
115 |
aatcatggtcaagactaga |
133 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
31654702 |
aa-catggtcaagactaga |
31654719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 51443551 - 51443661
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
51443551 |
atcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatt |
51443650 |
T |
|
| Q |
113 |
taaatcatggt |
123 |
Q |
| |
|
|||||||||| |
|
|
| T |
51443651 |
caaatcatggt |
51443661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 24304423 - 24304487
Alignment:
| Q |
65 |
gaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagac |
129 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| |||| ||||||| |||||| |||| ||||| |
|
|
| T |
24304423 |
gaatcatgaagcatatcaaatccaatatcataacctattattttcatctaaatcgtggttaagac |
24304487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 40888716 - 40888861
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatccatgaatcaagaagcatatcaaatccaacgtcataatctatcattttcactt |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |
|
|
| T |
40888716 |
atcaactacaagaaaattaataaaatataataaatcttttcactcatccatgaatcaagaagcatattaaattcaacgtcataatctatcattttcaatt |
40888815 |
T |
|
| Q |
114 |
aaatcatggtcaagactagaacctttaccttaagcgctttccttcc |
159 |
Q |
| |
|
||||||||| ||||||||| || |||||||| | ||||| ||||| |
|
|
| T |
40888816 |
aaatcatggccaagactagggcccttaccttaggagctttacttcc |
40888861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 15990195 - 15990327
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
15990195 |
atcaactacaagaaaattaataaaacataataattcttttcactcatccattaaatcaagaagcatatcaaattcaacgtcataatctatcattttcagt |
15990294 |
T |
|
| Q |
113 |
taaatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
||||||||||||||||||||| || |||||||| |
|
|
| T |
15990295 |
taaatcatggtcaagactagagcccttacctta |
15990327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 29453777 - 29453654
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaa-cataattaatcttttcactcatccatgaatcaagaagcatatcaaatccaacgtcataatc----tatcatttt |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
29453777 |
atcaactacaagaaaattaataaaaacataataaatcttttcactcatccatgaatcaagaagcatatcaaattcaatgtcataatctatctatcatttt |
29453678 |
T |
|
| Q |
109 |
cacttaaatcatggtcaagactaga |
133 |
Q |
| |
|
|| ||||| ||||||||| |||||| |
|
|
| T |
29453677 |
catttaaa-catggtcaaaactaga |
29453654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 52641389 - 52641489
Alignment:
| Q |
46 |
aatcttttcactcatccat-gaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagactagaacctttacctt |
144 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||| |||||| || ||||||| |
|
|
| T |
52641389 |
aatcttttcactcatccattgagtcaagaagcatatcaaattcaacatcataatctatcattttcaattaaatcatggtcaaaactagagcccttacctt |
52641488 |
T |
|
| Q |
145 |
a |
145 |
Q |
| |
|
| |
|
|
| T |
52641489 |
a |
52641489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 19544712 - 19544805
Alignment:
| Q |
40 |
ataattaatcttttcactcatccat-gaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagactaga |
133 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| ||||||||| ||| |||| |||||| |||||| ||||| ||| |||||| ||| ||||||| |
|
|
| T |
19544712 |
ataataaatcttttcactcatccatcgaatcaataagcatatc-aattcaacatcataacctatcactttcatttagatcatgatcatgactaga |
19544805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 11650602 - 11650683
Alignment:
| Q |
64 |
tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| || | || |||||| |||||||||||| ||||||| | || |||||||| |
|
|
| T |
11650602 |
tgaatcaagaagcatatcaaattcaatatcacaaccaattattttcttttaaatcatggttaagactatagcccttacctta |
11650683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 27977176 - 27977321
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcact |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
27977176 |
atcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatt |
27977275 |
T |
|
| Q |
113 |
taaatcatggtcaagactagaacctttaccttaagcgctttccttcc |
159 |
Q |
| |
|
|||| |||||| ||||||||| || |||||||| |||||||||||| |
|
|
| T |
27977276 |
taaa-catggttaagactagagcccttaccttagacgctttccttcc |
27977321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 28063704 - 28063849
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcact |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
28063704 |
atcaactacaagaaaattaatgaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatt |
28063803 |
T |
|
| Q |
113 |
taaatcatggtcaagactagaacctttaccttaagcgctttccttcc |
159 |
Q |
| |
|
|||| |||||| ||||||||| || |||||||| |||||||||||| |
|
|
| T |
28063804 |
taaa-catggttaagactagagcccttaccttagacgctttccttcc |
28063849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 28497230 - 28497349
Alignment:
| Q |
26 |
aaaattaataaaacataattaatcttttcactcatccatgaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtca |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || ||| |||| |||||| |||||||||||| |||||||||||||| |
|
|
| T |
28497230 |
aaaattaataaaacataataaatcttttcactcattcatgaatcaagaagcatgtcgaattcaacatcataacctatcattttcaattaaatcatggtca |
28497329 |
T |
|
| Q |
126 |
agactagaacctttacctta |
145 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
28497330 |
agactagagcccttacctta |
28497349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 144
Target Start/End: Original strand, 16131107 - 16131237
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatccatgaatcaagaagcatatcaaatccaacgtcataatctatcattttcactt |
113 |
Q |
| |
|
||||||||||| ||||||||||||| ||| | |||||||||||||||| |||||||||||||||| || ||| || | |||||| |||||||||||| || |
|
|
| T |
16131107 |
atcaactacaaaaaaattaataaaatatagtaaatcttttcactcatctatgaatcaagaagcatgtcgaattcagcatcataacctatcattttcaatt |
16131206 |
T |
|
| Q |
114 |
aaatcatggtcaagactagaacctttacctt |
144 |
Q |
| |
|
||| |||||||||||||||| || ||||||| |
|
|
| T |
16131207 |
aaaccatggtcaagactagagcccttacctt |
16131237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 22403886 - 22403714
Alignment:
| Q |
17 |
aactacaagaaaattaataaaacataattaatcttttcactcatccat-------------gaatcaagaagcatatcaaatccaacgtcataatctatc |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
22403886 |
aacttcaagaaaattaataaaacataataaatcttttcactcatccatcgaatcatccatcgaatcaagaagcatatcaaattcaacatcataatctatt |
22403787 |
T |
|
| Q |
104 |
attttcacttaaatcatggtcaagactagaacctttaccttaagcgctttccttccaagcaaaactctaaacc |
176 |
Q |
| |
|
||||||| |||||||||||| ||||||||| || |||||| || |||| ||||| ||| ||||||||||| |
|
|
| T |
22403786 |
attttcagttaaatcatggtaaagactagagcccttacctcgagatcttttcttcctagccgaactctaaacc |
22403714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 29046588 - 29046702
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
|||||||||||||| |||||||| | ||| ||| |||||| |||||||| || ||||| |||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
29046588 |
caactacaagaaaaataataaaatacaataaatattttcaatcatccattaaatcaaggagcatatcaaattcaacatcataatctatcattttcattta |
29046687 |
T |
|
| Q |
115 |
aatcatggtcaagact |
130 |
Q |
| |
|
|| ||||||| ||||| |
|
|
| T |
29046688 |
aa-catggtctagact |
29046702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 29587705 - 29587572
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatctttt-cactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
29587705 |
atcaactacaagaaaattaataaaacataataaatctttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcat |
29587606 |
T |
|
| Q |
112 |
ttaaatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
| |||||||||||||||||||| || |||||||| |
|
|
| T |
29587605 |
tcaaatcatggtcaagactagagcccttacctta |
29587572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 13168007 - 13167880
Alignment:
| Q |
20 |
tacaagaaaattaataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatc |
118 |
Q |
| |
|
|||||| ||| |||||||||| ||| ||||||||| ||||||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
13168007 |
tacaagcaaaataataaaacacaataaatcttttccctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcacttaaatc |
13167908 |
T |
|
| Q |
119 |
atggtcaagactagaacctttaccttaa |
146 |
Q |
| |
|
||||||||||||||| || ||||||||| |
|
|
| T |
13167907 |
atggtcaagactagagcccttaccttaa |
13167880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 9745253 - 9745123
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatccat-gaatcaagaagcatatcaaatccaacgtcataatctatcattttcact |
112 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| || |
|
|
| T |
9745253 |
atcaactacaagaaaaataataaaacacaataaatattttcactcatccattgaatcaagaagcatatcaaattcaacatcataatctatcattttc-ct |
9745155 |
T |
|
| Q |
113 |
taaatcatggtcaagactagaacctttacctt |
144 |
Q |
| |
|
| || |||||||||||||||| || ||||||| |
|
|
| T |
9745154 |
ttaaacatggtcaagactagagcccttacctt |
9745123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 10530168 - 10530297
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
10530168 |
caactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattta |
10530267 |
T |
|
| Q |
115 |
aatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
|| |||||||||||||||| || |||||||| |
|
|
| T |
10530268 |
aa-catggtcaagactagagcccttacctta |
10530297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 8311862 - 8311740
Alignment:
| Q |
14 |
atcaactacaa-gaaaattaataaaa-cataattaatcttttcactcatccat-gaatcaagaagcatatcaaatccaacgtcataatctatcattttca |
110 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| ||||||||||| ||||||| |||||||||||||| |||||| |||| ||||||||||| ||||||| |
|
|
| T |
8311862 |
atcaactacaaagaaaagtaataaaaacataataaatcttttcacccatccatcgaatcaagaagcatgtcaaattcaacatcataatctattattttca |
8311763 |
T |
|
| Q |
111 |
cttaaatcatggtcaagactaga |
133 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8311762 |
gttaaatcatggtcaagactaga |
8311740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 46002797 - 46002887
Alignment:
| Q |
42 |
aattaatcttttcactcatccat-gaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagacta |
131 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| || |||| ||||||| |||||||||| ||||||||| |
|
|
| T |
46002797 |
aattaatcttttcactcatccattgaatcaagaagcatatcaaattcaatatcacaacctattattttcatttaaatcatgatcaagacta |
46002887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 31211192 - 31211100
Alignment:
| Q |
42 |
aattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagactaga |
133 |
Q |
| |
|
||||||||| ||||| |||| || || |||||||||||||||||| || |||||| |||| ||||||| || |||||| ||||||||||| |
|
|
| T |
31211192 |
aattaatctcttcacgcatctattaaatcaagaagcatatcaaatttaatatcataacctattattttcatctagatcatgatcaagactaga |
31211100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 21231874 - 21232005
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
21231874 |
atcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcatt |
21231973 |
T |
|
| Q |
113 |
taaatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
|||| || ||||||||||||| || |||||||| |
|
|
| T |
21231974 |
taaa-cacggtcaagactagagccattacctta |
21232005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 9818205 - 9818334
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
9818205 |
caactacaagaaaaataataaaacacgataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctatcattttcattta |
9818304 |
T |
|
| Q |
115 |
aatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
|| |||||||||||||||| || |||||||| |
|
|
| T |
9818305 |
aa-catggtcaagactagagcccttacctta |
9818334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 42077499 - 42077619
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| | ||||||||||| |||||||| |||| ||||||||||||||| ||| ||| |
|
|
| T |
42077499 |
caactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcgtatcaaattcaacatcataatctatcattctcattta |
42077598 |
T |
|
| Q |
115 |
aatcatggtcaagactagaacc |
136 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
42077599 |
aa-catggtcaagactagaacc |
42077619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 9881215 - 9881084
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||| |||||| | ||||||||||||| || ||||||||||| ||||||| | | |
|
|
| T |
9881215 |
caactacaagaaaattaataaaacatagtaaatcttttcactcatccattgaatcgataagcatatcaaatttaagatcataatctattattttcattca |
9881116 |
T |
|
| Q |
115 |
aatcatggtcaagactagaacctttaccttaa |
146 |
Q |
| |
|
|| |||| ||||||||| | || ||||||||| |
|
|
| T |
9881115 |
aaacatgatcaagactatagcccttaccttaa |
9881084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 24423323 - 24423234
Alignment:
| Q |
43 |
attaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagactag |
132 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||||| |||| ||| |||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
24423323 |
attaatctcttcactcatccaatgaat-aagaagcatacaaaattcaatatcataaactatcattttcagttaaatcatggtcaagactag |
24423234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 2152 - 2023
Alignment:
| Q |
14 |
atcaactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |||| ||||||||||| |||||| | |
|
|
| T |
2152 |
atcaactacaagaaaattaataaaacataataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacatcataatctattgttttcatt |
2053 |
T |
|
| Q |
113 |
taaatcatggtcaagactagaacctttacct |
143 |
Q |
| |
|
||||| ||||||||||||||| || |||||| |
|
|
| T |
2052 |
taaat-atggtcaagactagagcccttacct |
2023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 41943045 - 41943174
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||||||||||||| | |||||||||||||||||||| |||| |||||||||||||||||| ||| |
|
|
| T |
41943045 |
caactacaagaaaaataataaaacacaataaatcttttcactcatccattaaatcaagaagcatatcaaattcaacaacataatctatcattttcattta |
41943144 |
T |
|
| Q |
115 |
aatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
|| |||||||||||||||| ||||| ||||| |
|
|
| T |
41943145 |
aa-catggtcaagactagagcctttgcctta |
41943174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 3295407 - 3295304
Alignment:
| Q |
31 |
taataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagac |
129 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||||| || |||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3295407 |
taataaaacacaataaatcttttctctcatccattaaatcaagaagcatatcaaattcaacatcataatctatcagtttcacttaaatcatggtcaagac |
3295308 |
T |
|
| Q |
130 |
taga |
133 |
Q |
| |
|
|||| |
|
|
| T |
3295307 |
taga |
3295304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 31519155 - 31519254
Alignment:
| Q |
46 |
aatcttttcactcatccat-gaatcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagactagaacctttacctt |
144 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
31519155 |
aatcttttcactcatctattgagtcaagaagcatatcaaattcaacgtcataacctatcattttcaattaaatcatggtcaagactagagcctttacctt |
31519254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 10336111 - 10336177
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatcca-tgaatcaagaagcatatc |
81 |
Q |
| |
|
|||||||||||||| |||||||||| | | |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
10336111 |
caactacaagaaaaataataaaacacactaaatcttttcactcatccattaaatcaagaagcatatc |
10336177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 10344738 - 10344801
Alignment:
| Q |
81 |
caaatccaacgtcataatctatcattttcacttaaatcatggtcaagactagaacctttacctta |
145 |
Q |
| |
|
||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
10344738 |
caaattcaacatcataatctatcattttcatttaaa-aatggtcaagactagaacccttacctta |
10344801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0259 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0259
Description:
Target: scaffold0259; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 2545 - 2660
Alignment:
| Q |
31 |
taataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagac |
129 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||| |||| |||||| |||||||||||| ||||||||||||||| || |
|
|
| T |
2545 |
taataaaacacaataaatcttttcactcatccattaaatcaagaagcatgtcaaattcaacatcataacctatcattttcaattaaatcatggtcaaaac |
2644 |
T |
|
| Q |
130 |
tagaacctttacctta |
145 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
2645 |
tagagcccttacctta |
2660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 107983 - 107861
Alignment:
| Q |
16 |
caactacaagaaaattaataaaacataattaatcttttcactcatccatgaa-tcaagaagcatatcaaatccaacgtcataatctatcattttcactta |
114 |
Q |
| |
|
||||||||| |||| |||||||| | ||| ||||||||||||||||||| || ||||| |||||||||||| |||| ||||||||||||||||||| ||| |
|
|
| T |
107983 |
caactacaacaaaaataataaaatacaataaatcttttcactcatccattaaatcaaggagcatatcaaattcaacatcataatctatcattttcattta |
107884 |
T |
|
| Q |
115 |
aatcatggtcaagactagaacctt |
138 |
Q |
| |
|
|| |||||||||||||||| |||| |
|
|
| T |
107883 |
aa-catggtcaagactagagcctt |
107861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 18927183 - 18927243
Alignment:
| Q |
69 |
caagaagcatatcaaatccaacgtcataatctatcattttcacttaaatcatggtcaagac |
129 |
Q |
| |
|
||||||||||||||||| |||| |||||| |||| ||||||| ||||| ||||||||||| |
|
|
| T |
18927183 |
caagaagcatatcaaattcaacttcataacctattattttcatctaaataatggtcaagac |
18927243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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