View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16419_low_1 (Length: 693)
Name: NF16419_low_1
Description: NF16419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16419_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 219 - 491
Target Start/End: Complemental strand, 43658678 - 43658406
Alignment:
| Q |
219 |
gttttgcaggaaatggctcgaatgatacgagaacatttgaaaaaattaatatatcttataatatttgaacatacaatttatctggaatgtgatgcatttt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43658678 |
gttttgcaggaaatggctcgaatgatacgagaacatttgaaaacattaatatatcttagaatatttgaacatacaatttatctggactgtgatgcatttt |
43658579 |
T |
|
| Q |
319 |
ccaaacaagctttcaaagcaaagcaatatttgcatcaaggccatcttccttcttttggtctagaaatcatttatcaggtgcatgtactatgcttatttgg |
418 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43658578 |
ccaaacaaggtttccaagcaaagcaatatttgcatcaaggccatcttccttcttttggtctagaaatcatttatcaggtgcatgtactatgcttatttgg |
43658479 |
T |
|
| Q |
419 |
agcatttggtgagagggggaattacacaataggttttgtaacaattatctccataaagtcccatttcaaataa |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43658478 |
agcatttggtgagagggggaattacacaataggttttgtaacaattatctccataaagtcccatttcaaataa |
43658406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 43658920 - 43658678
Alignment:
| Q |
7 |
attctactattgtgaagctcagtaagttttcaagtaacttaatggnnnnnnnnttatggaatcaatatttccaaggtagctggtgatgcatccatatttg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43658920 |
attctactattgtgaagctcagtaagttttcaagtaacttaatggaaaaaaaattatggaatcaatatttccaaggtagctggtgatgcatccatatttg |
43658821 |
T |
|
| Q |
107 |
catcttgttttatttaatatgtgcatgcatttttaggtgaattatatacaatgtttgtagtcttgtttgattttcatgtagattggatgactgcatttgt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43658820 |
catcttgttttatttaatatgtgcatgcatttttaggtgaattatatacaatgtttgtagtcttgtttgattttcatgtagatcggatgactgcatttgt |
43658721 |
T |
|
| Q |
207 |
aagtcatgttttgttttgcaggaaatggctcgaatgatacgag |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43658720 |
aagtcatgttttgttttgcaggaaatggctcgaatgatacgag |
43658678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University