View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16419_low_3 (Length: 431)

Name: NF16419_low_3
Description: NF16419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16419_low_3
NF16419_low_3
[»] chr7 (2 HSPs)
chr7 (62-355)||(27232689-27232983)
chr7 (34-285)||(46434119-46434370)
[»] chr6 (2 HSPs)
chr6 (18-416)||(29945192-29945599)
chr6 (92-128)||(28106682-28106718)
[»] chr2 (1 HSPs)
chr2 (18-416)||(10784324-10784731)
[»] scaffold0025 (2 HSPs)
scaffold0025 (140-416)||(61526-61813)
scaffold0025 (18-145)||(62126-62253)
[»] chr3 (3 HSPs)
chr3 (35-362)||(601568-601904)
chr3 (19-285)||(42968218-42968484)
chr3 (77-285)||(6582400-6582608)
[»] chr8 (4 HSPs)
chr8 (65-285)||(7852418-7852638)
chr8 (20-193)||(23275851-23276024)
chr8 (18-122)||(23401985-23402089)
chr8 (188-287)||(40613291-40613390)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 62 - 355
Target Start/End: Original strand, 27232689 - 27232983
Alignment:
Q  62 agagaaagcttgcagatg-aaagcaagcttcgtgatctgaaagcaaagaactacctctttcaatccatagtcagatcaattatggtaactattcttgttc 160  Q
    ||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  27232689 agagagagcttgcagatggaaagcaagctttgtgatctgaaagcaaagaactacctatttcaatccatagacagatcaattatggtaactattcttgttc 27232788  T
Q  161 gtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctcagttgaaaactttacgcagagaatttga 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27232789 gtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctcagttgaaaactttacgaagagaatttga 27232888  T
Q  261 agttcttgatatgaaagatggtgaaacagtaaattcaagaactcttgcaattgctaaccgtatgactacacattgtgaaagattagaacaaacta 355  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||| |||| |||||||| ||||| |||||| ||||||| ||||||    
T  27232889 agttcttgatatgaaagaaggtgaagcagtgaattcaagaactcttgcaattgataacggtatgactgcacatggtgaaaaattagaataaacta 27232983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 285
Target Start/End: Complemental strand, 46434370 - 46434119
Alignment:
Q  34 gttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctctttcaatccatagtca 133  Q
    ||||||||||| || |||||||| || ||  |||  ||||||||||||||||| ||||||||| |||| | |||||| || ||||| ||||| || |       
T  46434370 gttgcacctgctaatgcaacaccagaacaacgaagacttgcagatgaaagcaaacttcgtgatttgaaggtaaagaattatctcttccaatctattgatc 46434271  T
Q  134 gatcaattatggtaactattcttgttcgtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctca 233  Q
    | ||||| |||| ||| ||| | |||||||| || || ||||| |||||| |||| |||||||  || |||||||| ||||||||||| ||| | |||||    
T  46434270 gttcaatcatggaaaccattttggttcgtgatacggccaaagatatatgggattcaatgcacataaaatatcaaggttcaacaaaggttaaaagagctca 46434171  T
Q  234 gttgaaaactttacgcagagaatttgaagttcttgatatgaaagatggtgaa 285  Q
     ||| ||||| | ||  | |||||||||||||||   |||||||||||||||    
T  46434170 attgcaaactcttcgtcgtgaatttgaagttctttccatgaaagatggtgaa 46434119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 29945599 - 29945192
Alignment:
Q  18 tgaacatggagtcatagttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctc 117  Q
    |||||||||| ||| || ||||| |||||||||||||| | |||||||||||||||||||||||||||||||| |||| || |||||||||||||||||     
T  29945599 tgaacatggaatcacagctgcacatgcaaacgcaacactgaagcagagaaagcttgcagatgaaagcaagctttgtgacctaaaagcaaagaactaccta 29945500  T
Q  118 tttcaatccatagtcagatcaattatggtaactattcttgttcgtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaa 217  Q
    || ||||||||||  |||||||||||||  ||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  29945499 ttccaatccatagatagatcaattatggagactattcttgttcgtgatactgcaaaagacatattggattccatgcgcaggaagtatcaaggctcaacaa 29945400  T
Q  218 aggtaaaacgggctcagttgaaaactttacgcagagaatttgaagttcttgatatgaaagatggtgaaacagtaaat---------tcaagaactcttgc 308  Q
    |||||||||| ||||| |||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |||         ||||||||||||||    
T  29945399 aggtaaaacgtgctcaattgaaaactttacgtagagaatttgaggttcttgctatgaaagaaggtgaaacagtgaatgaatacatctcaagaactcttgc 29945300  T
Q  309 aattgctaaccgtatgactacacattgtgaaagattagaacaaactatgattgtagaaaaagtgttaagatccatgacctgaagattcaactacgttgtg 408  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||| | |||||||| |||||||| ||||| ||||| | ||||||||| || ||||||    
T  29945299 aattgctaaccgtatgactgcacatggtgaaagattagagcaaactgtaattgtagagaaagtgttgagatcaatgacatcaagattcaattatgttgtg 29945200  T
Q  409 tgttcaat 416  Q
    || |||||    
T  29945199 tgctcaat 29945192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 28106682 - 28106718
Alignment:
Q  92 gtgatctgaaagcaaagaactacctctttcaatccat 128  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  28106682 gtgatcttaaagtaaagaactacctctttcaatccat 28106718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 10784731 - 10784324
Alignment:
Q  18 tgaacatggagtcatagttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctc 117  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |||||||||    
T  10784731 tgaacatggaatcacagctgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgagagcaagctttgtgatctgaaagcgaaaaactacctc 10784632  T
Q  118 tttcaatccatagtcagatcaattatggtaactattcttgttcgtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaa 217  Q
    || |||||||| |  |||||||||||||  ||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  10784631 ttccaatccattgatagatcaattatggagactattcttgttcgtgatagtgcaaaagacatatgggattccatgcgcaggaagtatcaaggttcaacaa 10784532  T
Q  218 aggtaaaacgggctcagttgaaaactttacgcagagaatttgaagttcttgatatgaaagatggtgaaacagtaaa---------ttcaagaactcttgc 308  Q
    |||||||||| ||||| ||| |||||||||| |||||||||||  |||||| ||||||||| |||||||| || ||         |||||||||||||||    
T  10784531 aggtaaaacgtgctcaattgcaaactttacgtagagaatttgagattcttgctatgaaagaaggtgaaactgtgaatgaatacatttcaagaactcttgc 10784432  T
Q  309 aattgctaaccgtatgactacacattgtgaaagattagaacaaactatgattgtagaaaaagtgttaagatccatgacctgaagattcaactacgttgtg 408  Q
    ||||| ||||||||||||| ||||| ||||||||||| | |||||  | |||||||| |||||||| ||||||||||| | ||||||||| || |||||     
T  10784431 aattgttaaccgtatgactgcacatggtgaaagattatagcaaacagtaattgtagagaaagtgttgagatccatgacatcaagattcaattatgttgtt 10784332  T
Q  409 tgttcaat 416  Q
    || |||||    
T  10784331 tgctcaat 10784324  T

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Target: scaffold0025 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 140 - 416
Target Start/End: Complemental strand, 61813 - 61526
Alignment:
Q  140 ttatggtaactattcttgttcgtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctcagttgaa 239  Q
    |||||| |||||| ||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||  ||||| ||| |    
T  61813 ttatggaaactatccttattcgtgaaactgcaaaagacatatgggattccatgcgcaggaagtatcaaggctcaataaaggtaaaacatgctcaattgca 61714  T
Q  240 aactttacgcagagaatttgaagttcttgatatgaaagatggtgaaacagtaaat---------tcaagaactcttgcaattgctaaccgtatgactaca 330  Q
    ||||||||||||| ||||||||||||||| ||||||| | ||| ||||||| |||         ||||||||||||||||||||||||||||||||| ||    
T  61713 aactttacgcagataatttgaagttcttgctatgaaaaaaggtaaaacagtgaatgaatatatctcaagaactcttgcaattgctaaccgtatgactgca 61614  T
Q  331 cattgtgaaagattagaacaaac--tatgattgtagaaaaagtgttaagatccatgacctgaagattcaactacgttgtgtgttcaat 416  Q
    ||| |||||||||||||||||||  | ||| |||||| ||| | |||||||||||||||| ||||||||||||| |||||||||||||    
T  61613 catggtgaaagattagaacaaactgtgtgactgtagagaaatttttaagatccatgacctcaagattcaactacattgtgtgttcaat 61526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 62253 - 62126
Alignment:
Q  18 tgaacatggagtcatagttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctc 117  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  62253 tgaacatggagtcacagttgcacatgcaaacgcaacactggagcagagaaagcttgcagatgaaagcaagctttgtgatctaaaagcaaagaactacctc 62154  T
Q  118 tttcaatccatagtcagatcaattatgg 145  Q
    ||||||||||||| | ||||||||||||    
T  62153 tttcaatccatagactgatcaattatgg 62126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 35 - 362
Target Start/End: Original strand, 601568 - 601904
Alignment:
Q  35 ttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctctttcaatccatagtcag 134  Q
    |||| ||| ||||||||||||| || |||||||| ||||||||||||||||| ||||||||| | ||||||||||| || || |||||||| || |   |    
T  601568 ttgctcctccaaacgcaacaccagaacagagaaaacttgcagatgaaagcaaacttcgtgatttaaaagcaaagaattatctttttcaatcaattgatcg 601667  T
Q  135 atcaattatggtaactattcttgttcgtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctcag 234  Q
     |||||||||| |||||||||||||||||| ||||| ||||| || ||| | || ||||  || || ||||||||||| |||||||| ||  | |||||     
T  601668 ttcaattatggaaactattcttgttcgtgatactgctaaagatatttgggagtctatgcgtagaaaatatcaaggctctacaaaggtgaagagagctcaa 601767  T
Q  235 ttgaaaactttacgcagagaatttgaagttcttgatatgaaagatggtgaaacagtaaatt---------caagaactcttgcaattgctaaccgtatga 325  Q
    ||| ||||| | ||  | |||||||||||||||   |||||||| |||||| | || ||||          |||||||||||||||||| ||||||||||    
T  601768 ttgcaaactcttcgtcgtgaatttgaagttctttccatgaaagaaggtgaatctgtgaattattacgttggaagaactcttgcaattgcaaaccgtatga 601867  T
Q  326 ctacacattgtgaaagattagaacaaactatgattgt 362  Q
    |  ||||| |||||||||||||||||||||| |||||    
T  601868 catcacatggtgaaagattagaacaaactattattgt 601904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 42968218 - 42968484
Alignment:
Q  19 gaacatggagtcatagttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctct 118  Q
    ||||||||| |||| |||||||||||||| |||||||| ||  ||||||| |||||||| |||||||||||||||||||| ||||| ||||| || || |    
T  42968218 gaacatggaatcatggttgcacctgcaaatgcaacaccagaatagagaaaacttgcagaagaaagcaagcttcgtgatctcaaagccaagaattatctgt 42968317  T
Q  119 ttcaatccatagtcagatcaattatggtaactattcttgttcgtgacactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaaa 218  Q
    |||||||||| |   | || |||||||  || |  ||||||||||| || ||||| || || ||| |||| || | ||| || ||||| |||||||| ||    
T  42968318 ttcaatccattgatcgttctattatggagacaacccttgttcgtgatacagcaaaggatatttgggattcaatacgcagaaactatcagggctcaacgaa 42968417  T
Q  219 ggtaaaacgggctcagttgaaaactttacgcagagaatttgaagttcttgatatgaaagatggtgaa 285  Q
    ||| ||||| ||||| ||| ||||| |  |  | ||||||||||||||||  |||||||||| ||||    
T  42968418 ggtgaaacgagctcaattgcaaactcttagacgtgaatttgaagttcttgccatgaaagatgatgaa 42968484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 6582608 - 6582400
Alignment:
Q  77 atgaaagcaagcttcgtgatctgaaagcaaagaactacctctttcaatccatagtcagatcaattatggtaactattcttgttcgtgacactgcaaaaga 176  Q
    |||||||||||||||||||| ||||||  ||||| || ||||||||||||||||   | ||||| ||||  |  ||| ||||| |||| ||  |||| ||    
T  6582608 atgaaagcaagcttcgtgatttgaaagtgaagaattatctctttcaatccatagatcgctcaatcatggagaaaattattgtttgtgatacatcaaagga 6582509  T
Q  177 catatggcattccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctcagttgaaaactttacgcagagaatttgaagttcttgatatgaaa 276  Q
     |||||| |||||||||  || || |||||||||||||||||||| ||||| ||||| ||| ||| | | ||  | ||||| ||||||||||  ||||||    
T  6582508 tatatgggattccatgcgtagaaaatatcaaggctcaacaaaggttaaacgagctcaattgcaaattcttcgtcgtgaattagaagttcttgccatgaaa 6582409  T
Q  277 gatggtgaa 285  Q
    ||| |||||    
T  6582408 gatagtgaa 6582400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 285
Target Start/End: Complemental strand, 7852638 - 7852418
Alignment:
Q  65 gaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctctttcaatccatagtcagatcaattatggtaactattcttgttcgtga 164  Q
    ||||||||||||||||||| || ||  ||||| ||||||| ||||| || || |||||||| || |   | ||||| |||| ||| ||||||||||| ||    
T  7852638 gaaagcttgcagatgaaagtaaactgtgtgatttgaaagcgaagaattatctttttcaatctattgatcgttcaatcatggaaaccattcttgttcgaga 7852539  T
Q  165 cactgcaaaagacatatggcattccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctcagttgaaaactttacgcagagaatttgaagtt 264  Q
     | ||| ||||| || ||| ||| ||||| ||| ||||||||||| |||||||| || ||| | ||||| ||  ||||  | ||  | ||||||||||||    
T  7852538 taatgccaaagatatctgggattgcatgcgcagaaagtatcaaggttcaacaaaagttaaaagagctcaattccaaaccctccgtcgtgaatttgaagtt 7852439  T
Q  265 cttgatatgaaagatggtgaa 285  Q
    ||||  |||||||| ||||||    
T  7852438 cttgcaatgaaagaaggtgaa 7852418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 23276024 - 23275851
Alignment:
Q  20 aacatggagtcatagttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctctt 119  Q
    ||||||| ||||| ||||| ||  ||||  |||||||||| ||  ||| ||||||||| ||||| || ||||| ||||||||||| ||||| || |||||    
T  23276024 aacatggtgtcattgttgctccaccaaatacaacaccggaacaacgaaggcttgcagaagaaagaaaacttcgcgatctgaaagcgaagaattatctctt 23275925  T
Q  120 tcaatccatagtcagatcaattatggtaactattcttgttcgtgacactgcaaaagacatatggcattccatgc 193  Q
    ||||||||| |   | ||||| ||||  || |||||||||| ||||||  | || || |||||| |||||||||    
T  23275924 tcaatccattgatcgctcaatcatggagacaattcttgttcctgacacaaccaaggatatatgggattccatgc 23275851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 23401985 - 23402089
Alignment:
Q  18 tgaacatggagtcatagttgcacctgcaaacgcaacaccggagcagagaaagcttgcagatgaaagcaagcttcgtgatctgaaagcaaagaactacctc 117  Q
    ||||||||| ||||| ||||| ||  |||| ||||||||||| ||  ||| ||||||||| ||||| || ||||| ||||||||||| ||||| || |||    
T  23401985 tgaacatggtgtcattgttgctccaccaaatgcaacaccggaacaacgaaggcttgcagaagaaagaaaacttcgcgatctgaaagcgaagaattatctc 23402084  T
Q  118 tttca 122  Q
    |||||    
T  23402085 tttca 23402089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 40613390 - 40613291
Alignment:
Q  188 ccatgcacaggaagtatcaaggctcaacaaaggtaaaacgggctcagttgaaaactttacgcagagaatttgaagttcttgatatgaaagatggtgaaac 287  Q
    |||||| ||| ||||||||||| || || ||||| ||||| ||||| ||| || |||||||||  ||||||||  ||||||| |||||||| ||||||||    
T  40613390 ccatgcgcagaaagtatcaaggttctaccaaggtgaaacgtgctcaattgcaagctttacgcaaggaatttgagattcttgaaatgaaagaaggtgaaac 40613291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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