View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16419_low_5 (Length: 248)
Name: NF16419_low_5
Description: NF16419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16419_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 35236719 - 35236869
Alignment:
| Q |
81 |
caaatattcttgtaggaccgctcaaactatgcatttaacatgaaagtagcccatattctaatacatgctcaaatgtaaatgcaaccaaaatagaacaaag |
180 |
Q |
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| T |
35236719 |
caaatattcttgtaggaccgctcaaactatgcatttaacatgaaagtagcccatattctaatacatgctcaaatgtaaatgcaaccaaaatagaacaaag |
35236818 |
T |
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| Q |
181 |
cattatcgtaactagaaacctggaattaaaaatcaaaagccatttgtgatc |
231 |
Q |
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| T |
35236819 |
cattatcgtaactagaaacctggaattaaaaatcaaaagccatttgtgatc |
35236869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 29291155 - 29291305
Alignment:
| Q |
81 |
caaatattcttgtaggaccgctcaaactatgcatttaacatgaaagtagcccatattctaatacatgctcaaatgtaaatgcaaccaaaatagaacaaag |
180 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||||||||||| |
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| T |
29291155 |
caaatattcttgtagtaccgctcaaactatgcatttaacatgaaagtagcccatattctaatataggctcaaatgtgaatttaaccaaaatagaacaaag |
29291254 |
T |
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| Q |
181 |
cattatcgtaactagaaacctggaattaaaaatcaaaagccatttgtgatc |
231 |
Q |
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| T |
29291255 |
cattatcgtaactagaaacctggaattaaaattcaaaagccatttgtgatc |
29291305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 35236609 - 35236696
Alignment:
| Q |
7 |
tcgaagaatatagtgaccacttgaactagttttgcttccaatttgatctataaccggcctgacaattaatctcgcaaatattcttgta |
94 |
Q |
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| T |
35236609 |
tcgatgaatatagtgaccacttgaactagttttgcttccaatttgatctataaccggcctgacaattaatctcgcaaatattattgta |
35236696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 29291042 - 29291123
Alignment:
| Q |
7 |
tcgaagaatatagtgaccacttgaactagttttgcttccaatttgatctataaccggcctgacaattaatctcgcaaatatt |
88 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29291042 |
tcgatgaatatagtgaccacttgaactagttttgcttccaatttgatctataaccggcctgacaattaatctcgcaaatatt |
29291123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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