View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16419_low_9 (Length: 202)
Name: NF16419_low_9
Description: NF16419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16419_low_9 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 3e-96; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 13380270 - 13380077
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
13380270 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttctta |
13380171 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13380170 |
tttgtgtaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttagtgatgatgt |
13380077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 51443574 - 51443383
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |
|
|
| T |
51443574 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgttgaatgtgtaaatcttgatgttttctta |
51443475 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
51443474 |
tttgtgcagtgagaaatgttgttgagttaaa-tga-tttcgttgtatttgtggttgtgttaaagtttactgattttgaagtatagtgatgatgt |
51443383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 8311232 - 8311053
Alignment:
| Q |
4 |
attaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttcttattt |
103 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8311232 |
attaattttcttgtagttaataattataagaattggtgggttgcaatcttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttattt |
8311133 |
T |
|
| Q |
104 |
gtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagttt |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||| || ||||| ||||||||||||||||||| | |||||| |
|
|
| T |
8311132 |
gtgcaatgagaaatgttgttgagttaaagtgatttttgatgtgtacgtggtggtgttaaagtttactgattataaagttt |
8311053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31654623 - 31654547
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
77 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
31654623 |
tttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
31654547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 24302924 - 24302840
Alignment:
| Q |
47 |
caattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaa |
131 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||||||||||| || |||||| ||| ||| |||| ||| ||||||||| |
|
|
| T |
24302924 |
caattttgtaaaagtatgtgatttcatgaatgtgtaaatcttgatgattgcttattcgtgaaatagaaaattttggtgagttaaa |
24302840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 31654521 - 31654474
Alignment:
| Q |
108 |
aatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggtt |
155 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
31654521 |
aatgagaaatgttgttgaattaaagtgatttttattgtgtatgtggtt |
31654474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 40888739 - 40888548
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
40888739 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttctta |
40888640 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgat |
192 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40888639 |
tttatgcaatgagaaatgctgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttagtgatgat |
40888548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 29453754 - 29453947
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
29453754 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttctta |
29453853 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
29453854 |
tttgtgcaatgagaaatgttgttgagttagagtgattttctttgtatatgtggttgtgttaaagtttactgattttgaagtttagtgatcatgt |
29453947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 15990218 - 15990079
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
15990218 |
tttattaattttcttgtagttgataattataagaattggtgggttgcaatcttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttctta |
15990119 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttc |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15990118 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttc |
15990079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 19544673 - 19544604
Alignment:
| Q |
20 |
ttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttg |
89 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||||||||||||| ||| || |||||||||||||||| |
|
|
| T |
19544673 |
ttgataaatataagaatttgtgagttgcaattttgttaaagtatgtgatttgaagaatgtgtaaatcttg |
19544604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 52641377 - 52641309
Alignment:
| Q |
20 |
ttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatctt |
88 |
Q |
| |
|
||||||| |||| ||||| |||| |||||||||||||||| || || ||| ||||||| ||| |||||| |
|
|
| T |
52641377 |
ttgataaatataagaatttgtgaattgcaattttgttaaaatacgtgatttgatgaatatgtgaatctt |
52641309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 9745230 - 9745423
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
9745230 |
tttattatttttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttctta |
9745329 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9745330 |
tttgtgcaatgagaaatgttgttgagttaaagtgattctcgttgtatatgtggctgtgttaaagtttactgattttgaagtttagtgatgatgt |
9745423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 10529571 - 10529397
Alignment:
| Q |
9 |
ttttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttcttatttgtgca |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10529571 |
tttttttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgca |
10529472 |
T |
|
| Q |
109 |
atgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagttt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
10529471 |
atgagaaatgttgttgagttaaagtgattttagttgtatatgtggttgtgttaaagtttagtgattataaagttt |
10529397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 8311838 - 8311993
Alignment:
| Q |
1 |
tttattaattttctt-gtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctt |
99 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||||||| |||| |||||| |||||| |
|
|
| T |
8311838 |
tttattacttttctttgtagttgataattataagaattggtgatttgcaattttgttaaagtatgtgatttgatgaatgttgaaatattgatgatttctt |
8311937 |
T |
|
| Q |
100 |
atttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggtt |
155 |
Q |
| |
|
| ||||| ||||||||||||||| || ||||||||||||| ||||| ||||||||| |
|
|
| T |
8311938 |
aattgtgaaatgagaaatgttgtggaattaaagtgatttttgttgtgtatgtggtt |
8311993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 29587682 - 29587765
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaa |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29587682 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaa |
29587765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10530189 - 10530113
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
77 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
10530189 |
tttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
10530113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 17855194 - 17855234
Alignment:
| Q |
154 |
ttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17855194 |
ttgtgttaaagtttactgattttgaagtttaatgatgatgt |
17855234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 13168044 - 13168089
Alignment:
| Q |
94 |
tttcttatttgtgcaatgagaaatgttgttgagttaaagtgatttt |
139 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
13168044 |
tttcttatttgtgaaatgagaaatgttgttgaattaaagtgatttt |
13168089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 16131130 - 16130942
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
16131130 |
tttattaatttttttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttctta |
16131031 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgat |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
16131030 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttacagtttactgattttgaagtttagtgat |
16130942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 27977196 - 27977007
Alignment:
| Q |
4 |
attaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttcttattt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27977196 |
attaattttcttgtagttgataattatatgaatttgtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttattt |
27977097 |
T |
|
| Q |
104 |
gtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27977096 |
gtgcaatgagaaatgttgttgagttaaagtga-tttcgttgtatatgtggttgtgttaaagtttactgattttgaagtataatgatgatgt |
27977007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 28063724 - 28063535
Alignment:
| Q |
4 |
attaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttcttattt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28063724 |
attaattttcttgtagttgataattatatgaatttgtgagttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttattt |
28063625 |
T |
|
| Q |
104 |
gtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28063624 |
gtgcaatgagaaatgttgttgagttaaagtga-tttcgttgtatatgtggttgtgttaaagtttactgattttgaagtataatgatgatgt |
28063535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 22403866 - 22404048
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||||| |||||||| |||| ||||||||| ||| ||||||||||||||||||| | |||||||| |
|
|
| T |
22403866 |
tttattaattttcttgaagttaataattataagaattggtgggttgcaatcttgtaaaagtatgtgatttgatgaatgtgtaaatcttggtattttctta |
22403965 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagttt |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
22403966 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgctatgtatatggttgtgttaaagtttactgattatgaagttt |
22404048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 29046609 - 29046430
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| || |||| ||| ||||||| ||| ||||||| |
|
|
| T |
29046609 |
tttattatttttcttgtagttgctaattaa--gaattggtgagttgcaattttgttagagcatgtgatttgatgaat------------atgatttctta |
29046524 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29046523 |
tttgtgcaatgagaaatgttgttgagttaaagtgactttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttagtgatgatgt |
29046430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 2129 - 2321
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
2129 |
tttattaattttcttgtagttgataattatatgaattggtgacttgcaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttctta |
2228 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
2229 |
tttgtgcaatgagaaatgttgttgagttaaagtga-tttcgttgtatatatggttgtgttaaagtttactgattttgaagtatagtgatgatgt |
2321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 21231897 - 21231705
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||| |
|
|
| T |
21231897 |
tttattaattttcttgtagttgataattatatgaattggtgagttccaattttgttaaagtatgtgattttatgattgtgtaaatcttgatgttttctta |
21231798 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
21231797 |
tttgtgcaatgagaaatgttgttgagttaaagtga-tttcgttgtatatgtgggtgtgttaaagtttactgattttgaagtacagtgatgatgt |
21231705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 9818226 - 9818045
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| ||| ||||||| |
|
|
| T |
9818226 |
tttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat------------atgatttctta |
9818139 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatgatgt |
194 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9818138 |
tttgtgaaatgagaaatgttgtggagttaaagtgactttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttagtgatgatgt |
9818045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 42 - 183
Target Start/End: Original strand, 9881211 - 9881352
Alignment:
| Q |
42 |
agttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttcttatttgtgcaatgagaaatgttgttgagttaaagtgattttcg |
141 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9881211 |
agttgtaattttgttaaagtatgtgatttgatgaatgtgtaaatcttgatgttttcttatttgtgcagtgagaaatgttgttgagttaaagtgattttcg |
9881310 |
T |
|
| Q |
142 |
ttgtatatgtggttgtgttaaagtttactgattttgaagttt |
183 |
Q |
| |
|
||| |||| ||||| ||||||||||||| ||| |||||||| |
|
|
| T |
9881311 |
ttgcgtatgcggttgcgttaaagtttactaattatgaagttt |
9881352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 42077520 - 42077444
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaat |
77 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| |
|
|
| T |
42077520 |
tttattatttttcttgtagttgttaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat |
42077444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 42077435 - 42077378
Alignment:
| Q |
98 |
ttatttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggtt |
155 |
Q |
| |
|
||||||||| |||||||||||||||| | |||||||||||| ||| | ||||||||| |
|
|
| T |
42077435 |
ttatttgtgaaatgagaaatgttgttaaattaaagtgatttgtgttatgtatgtggtt |
42077378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 107962 - 108140
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||| | |||| ||| ||||||| ||| ||||||| |
|
|
| T |
107962 |
tttattatttttgttgtagttgctaattataagaattggtgagttgcaattttgttagaacatgtgatttgatgaat------------atgatttctta |
108049 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggttgtgttaaagtttactgattttgaagtttaatgatga |
191 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| ||| || ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
108050 |
tttgtgcaatgagaaatgttgttgagttagagtgactttcgttatatttgaggttgtgttaaagtttactgattttgaagtttagtgatga |
108140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 41943066 - 41942924
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| ||| ||||||| |
|
|
| T |
41943066 |
tttattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat------------atgatttctta |
41942979 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggtt |
155 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
41942978 |
tttgtgaaatgagaaatgttgttgaattaaagtgatttgtattgtgtatgtggtt |
41942924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 10336132 - 10335990
Alignment:
| Q |
1 |
tttattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttctta |
100 |
Q |
| |
|
||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| ||| ||||||| |
|
|
| T |
10336132 |
tttattatttttcttgtagttgcaaattataagaattggtgagttgcaattttgttagagcatgtgatttgatgaat------------atgatttctta |
10336045 |
T |
|
| Q |
101 |
tttgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggtt |
155 |
Q |
| |
|
||| || ||||||||||||| |||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
10336044 |
tttatgaaatgagaaatgttattgaattaaagtgatttttgttgtgtatgtggtt |
10335990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 155
Target Start/End: Complemental strand, 148443 - 148303
Alignment:
| Q |
3 |
tattaattttcttgtagttgataattatatgaattggtgagttgcaattttgttaaagtatgtaattagatgaatgtgtaaatcttgatgttttcttatt |
102 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||| ||| ||||||| || ||||||||| |
|
|
| T |
148443 |
tattatttttcttgtagttgctaattataagaattggtgagttgcaattttgttagagtatgtgatttgatgaat------------atcatttcttatt |
148356 |
T |
|
| Q |
103 |
tgtgcaatgagaaatgttgttgagttaaagtgattttcgttgtatatgtggtt |
155 |
Q |
| |
|
|||| |||||||||||||||||| || |||||||||| ||||| ||| ||||| |
|
|
| T |
148355 |
tgtgaaatgagaaatgttgttgaatttaagtgatttttgttgtgtatttggtt |
148303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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