View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641_high_3 (Length: 416)
Name: NF1641_high_3
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_high_3 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 48235785 - 48235396
Alignment:
| Q |
18 |
agcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaaatcagatatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235785 |
agcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaaatcagatatat |
48235686 |
T |
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| Q |
118 |
attcattagggataatgctactgcagataatcacagccaggcctcctatgggactttctcatcatgttaaaagggcaattgaaaaggagcagttttcgga |
217 |
Q |
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| T |
48235685 |
attcattagggataatgctactgcagataatcacagccaggcctcctatgggactttctcatcatgttaaaagggcaattgaaaaggaccagttttcaga |
48235586 |
T |
|
| Q |
218 |
gattcttgattctgcggtgactgattggccagttgaagaggctctatcatttgcaaaattagcattgaattgtgcagaactctgcaagaaagataggcca |
317 |
Q |
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| T |
48235585 |
gattcttgattctgcggtgactgattggccagttgaagaggctctatcatttgcaaaattagcattgaattgtgcagaactctgcaagaaagataggcca |
48235486 |
T |
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| Q |
318 |
aatcttgcatcagttgtgcttccagagcttaatagattaagaggccttggatgtaatgataatcaagtttttactgatactaagaataat |
407 |
Q |
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| T |
48235485 |
aatcttgcatcagttgtgcttccagagcttaatagattaagaggccttggatttaatgataatcaagtttttactgatactaagaataat |
48235396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 50439382 - 50439335
Alignment:
| Q |
51 |
ggaacattttgttatattgatcccgagtatcaacaaacaggaatgtta |
98 |
Q |
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| T |
50439382 |
ggaacattctgttatatagatcctgagtatcagcaaacaggaatgtta |
50439335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 24 - 202
Target Start/End: Original strand, 3686721 - 3686899
Alignment:
| Q |
24 |
acacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaaatcagatatatattcat |
123 |
Q |
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||||||||| |||||||| ||| ||||||||||| ||||| |||||||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| | |
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| T |
3686721 |
acacaatatcacatgactgaagcagctggaacattatgttacattgatccagagtatcaaaatacaggaaaattaacaacaaaatcagatatttattctt |
3686820 |
T |
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| Q |
124 |
tagggataatgctactgcagataatcacagccaggcctcctatgggactttctcatcatgttaaaagggcaattgaaaa |
202 |
Q |
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| T |
3686821 |
tagggataatgtttcttcaaattatcacagctaagcctccaatgggactttctcatcatgttaaaagggcaattgaaaa |
3686899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 1274094 - 1274170
Alignment:
| Q |
21 |
gtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgtt |
97 |
Q |
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| T |
1274094 |
gtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcctgagtaccaacagacaggaatgtt |
1274170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 45728271 - 45728342
Alignment:
| Q |
24 |
acacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatg |
95 |
Q |
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| T |
45728271 |
acacaatgttgcatgacatcagcagcgggaacattctgttatattgatcccgagtatcagcaaacaggaatg |
45728342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 42674072 - 42674113
Alignment:
| Q |
51 |
ggaacattttgttatattgatcccgagtatcaacaaacagga |
92 |
Q |
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| T |
42674072 |
ggaacatttttttatattgatccggagtatcaacaaacagga |
42674113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 42674255 - 42674307
Alignment:
| Q |
234 |
gtgactgattggccagttgaagaggctctatcatttgcaaaattagcattgaa |
286 |
Q |
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| T |
42674255 |
gtgactgattggccggtcgaagaggctttatcacttgctaaattagctttgaa |
42674307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 102 - 178
Alignment:
| Q |
21 |
gtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgtt |
97 |
Q |
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| T |
102 |
gtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcctgagtaccaacagacaggaatgtt |
178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 6516920 - 6516960
Alignment:
| Q |
48 |
gctggaacattttgttatattgatcccgagtatcaacaaac |
88 |
Q |
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| T |
6516920 |
gctggaacattttgctacattgatcctgagtatcaacaaac |
6516960 |
T |
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