View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641_high_7 (Length: 354)
Name: NF1641_high_7
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 23412492 - 23412160
Alignment:
| Q |
10 |
aatatcctgaatacgtgaacgtgtgatgtcttagttctataaaaattcgatacaacagctgaaagaaacaaagaagtaaaagtgatataaaaataattaa |
109 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23412492 |
aatatcctgaatacgtgaacgtgttatgtcttagttctataaaaattcgatacaacagctgaaagaaacaaagaagtaaaagtgatataaaaataattaa |
23412393 |
T |
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| Q |
110 |
gaagattgtaaaattttattattagttttactttgttctataannnnnnnnnnattaaatttaagtcacactcttatattaaaataacaaggtgcttttg |
209 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23412392 |
gaagattggaaaattttattattagttttactttgttctataattttttttt-attaaatttaagtcacactcttatattaaaataacagggtgcttttg |
23412294 |
T |
|
| Q |
210 |
gtcactata----caaagaggctaaaagccccttattgtgtttaaagcttcaatattaatgtttttaatttgaatatttagatttaaacaaaatatgtaa |
305 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
23412293 |
gtcactatatatacaaagagactaaaagccccttattgtgtttaaagcttcaatatttatgtttttaatttgaatatttagatttaaaaaaaatatgtac |
23412194 |
T |
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| Q |
306 |
cgagggagaattttatcatatattgtggttctat |
339 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
23412193 |
cgagagagaattttatcatatattgtggttctat |
23412160 |
T |
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