View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641_low_1 (Length: 543)
Name: NF1641_low_1
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 29282330 - 29282721
Alignment:
| Q |
1 |
gttttgaactgtggccgcggttgtggatacgccacaaaccgttatattatgagaaaatatgaccattatggtcagaattgtggttgcgatgttattacag |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282330 |
gttttgaactgtggccgcagttgtggatacgccacaaaccgttatattatgagaaaatatgaccattatggtcagaattgtggttgcgatgttattacag |
29282429 |
T |
|
| Q |
101 |
acacctttatattgcatttcggaccatagtttaaaaccatggtcatgtccatttgaccatgaatcaaatgctctggacaaaatagtgtgctaatattcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||| |
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| T |
29282430 |
acacctttatattgcatttcggaccatagtttaaaaccatggtcatgtccatttgaccatgaatcaaatgctcttgacaaaata--gtactagtattcaa |
29282527 |
T |
|
| Q |
201 |
tcaatgccatatttatttgcattaattaatgtnnnnnnnttattcattaatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29282528 |
tcaatgccatatttatttgcattaattaatgtaaaaacattattgattaatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactg |
29282627 |
T |
|
| Q |
301 |
tgacaggaacaatggatgcaaacaagctagtggattatgtctatagaagaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29282628 |
tgacaggaacaatggatgcaaacaagctagtggattatgtctatagaagaaccaaaaaacaagcgaaaatagttcctaaacccgaacctgaacc |
29282721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 211 - 394
Target Start/End: Complemental strand, 6470455 - 6470271
Alignment:
| Q |
211 |
atttatttgcattaattaatgtnnnnnnnt-tattcattaatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaa |
309 |
Q |
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|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
6470455 |
atttatttgcattaattaatgtaaaaacttgtattgattaatgtaggagttcaaacagcagtggcagagtttagcacaaggaaagtaactgtgacaggaa |
6470356 |
T |
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| Q |
310 |
caatggatgcaaacaagctagtggattatgtctatagaagaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6470355 |
caatggatgcaaacaagctagtggattatgtctataaaaaaaccaaaaaacaagcaaaaatagttcctaaaccagaacctgaacc |
6470271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 394
Target Start/End: Complemental strand, 42525072 - 42524926
Alignment:
| Q |
248 |
taatgtaggagttcaaacagcagtgacagagtttagcacagggaaagtaactgtgacaggaacaatggatgcaaacaagctagtggattatgtctataga |
347 |
Q |
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|||||||||||| ||||||| || ||| ||| ||||||||| || || | |||||| || || ||||| | |||||| ||||||||| ||| |||||| |
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| T |
42525072 |
taatgtaggagtacaaacagtagagactgagcatagcacaggaaaggttattgtgacggggaccatggacggcaacaagttagtggattttgtttataga |
42524973 |
T |
|
| Q |
348 |
agaaccaaaaaacaagcgaaaatagttcctaaaccagaacctgaacc |
394 |
Q |
| |
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|||| ||||| ||||| ||||||||||| |||||||||||||||| |
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| T |
42524972 |
cgaactaaaaagcaagccaaaatagttccacaaccagaacctgaacc |
42524926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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