View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1641_low_10 (Length: 259)
Name: NF1641_low_10
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 7900787 - 7901007
Alignment:
| Q |
16 |
gaaacaagttacaatttcttttggcaaagcaaccttcaattttgatagcaggcataactcttggcattaggactcacccttgatgagccattacttcccc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7900787 |
gaaacaagttacaatttcttttggcaaagcaaccttcaattttgatagcaggca------------ttaggactcacccttgatgagccattacttcccc |
7900874 |
T |
|
| Q |
116 |
ttaacgataaagtatagccagtgtagtgcatattaactttggtttggcttcatgtacctctcacagtttcatgtcaaatgttgaaataaatgtataaaca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7900875 |
ttaacgataaagtatagccagtgtagtgtatattaactttggtttggcttcatgtacctctcacagtttcatgtcaaatgttgaaataaatgtataaaca |
7900974 |
T |
|
| Q |
216 |
attacaccttcaaaaaatattattctttcctat |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7900975 |
attacaccttcaaaaaatattattctttcctat |
7901007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University