View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1641_low_11 (Length: 251)

Name: NF1641_low_11
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1641_low_11
NF1641_low_11
[»] chr1 (3 HSPs)
chr1 (130-233)||(35583265-35583368)
chr1 (169-217)||(1815306-1815354)
chr1 (169-216)||(43492457-43492504)
[»] chr6 (1 HSPs)
chr6 (169-233)||(16766757-16766821)
[»] chr5 (1 HSPs)
chr5 (169-216)||(7677765-7677812)
[»] chr3 (1 HSPs)
chr3 (169-216)||(40993298-40993345)
[»] chr2 (1 HSPs)
chr2 (169-216)||(2438682-2438729)
[»] chr7 (2 HSPs)
chr7 (169-202)||(7197274-7197307)
chr7 (172-216)||(8234198-8234242)
[»] scaffold0053 (1 HSPs)
scaffold0053 (169-217)||(8847-8895)
[»] chr4 (2 HSPs)
chr4 (169-233)||(30982813-30982877)
chr4 (169-217)||(34306766-34306814)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 130 - 233
Target Start/End: Complemental strand, 35583368 - 35583265
Alignment:
Q  130 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctg 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  35583368 caccacttaattaagtctaatcatacttgtcagtgttgttgtcggtgtctgacacaacacatgcccgacactgtgtcacgcctaatctatagaatgtctg 35583269  T
Q  230 tgct 233  Q
    ||||    
T  35583268 tgct 35583265  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 1815306 - 1815354
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 217  Q
    |||||||||| ||||| ||||||||||||||||| | ||||||||||||    
T  1815306 tgtcggtgtccgacacgacacatgtccgacaccgggacacgcctaatct 1815354  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 43492504 - 43492457
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 216  Q
    |||||||||| |||||||||||||||||||||||   |||||||||||    
T  43492504 tgtcggtgtcagacacaacacatgtccgacaccggcacacgcctaatc 43492457  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 16766757 - 16766821
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 233  Q
    |||||||||| |||||||||| |||||||||||| | |||||||||||   |||||||| |||||    
T  16766757 tgtcggtgtcggacacaacacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgct 16766821  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 7677765 - 7677812
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 216  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||||    
T  7677765 tgtcggtgtctgacacgtcacatgtccgacaccgggacacgcctaatc 7677812  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 40993345 - 40993298
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 216  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  40993345 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 40993298  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 2438729 - 2438682
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 216  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||||||    
T  2438729 tgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatc 2438682  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 7197307 - 7197274
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccg 202  Q
    |||||||||| |||||||||||||||||||||||    
T  7197307 tgtcggtgtcggacacaacacatgtccgacaccg 7197274  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 8234198 - 8234242
Alignment:
Q  172 cggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatc 216  Q
    ||||||| ||||| ||||||||||||||||| | |||||||||||    
T  8234198 cggtgtcggacacgacacatgtccgacaccgagacacgcctaatc 8234242  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 8847 - 8895
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 217  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  8847 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 8895  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 30982877 - 30982813
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatctatagaatgtctgtgct 233  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||| | ||| |||| |||||    
T  30982877 tgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgct 30982813  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 34306814 - 34306766
Alignment:
Q  169 tgtcggtgtctgacacaacacatgtccgacaccgtgtcacgcctaatct 217  Q
    |||||||||| ||||| |||| |||||||||||| | ||||||||||||    
T  34306814 tgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatct 34306766  T

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