View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641_low_13 (Length: 250)
Name: NF1641_low_13
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 34771099 - 34770856
Alignment:
| Q |
1 |
tcaattgattcaaacttcgttagctctttttattattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattgaatggaa |
100 |
Q |
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| T |
34771099 |
tcaattgattcaaacttcgttagctctttttattattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattgaatggaa |
34771000 |
T |
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| Q |
101 |
taaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaattactatt |
200 |
Q |
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| T |
34770999 |
taaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaattactatt |
34770900 |
T |
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| Q |
201 |
ttatccctgatcttttatttgaaaaagtagtgtgttcttctctc |
244 |
Q |
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| T |
34770899 |
ttatccctgatcttttatttgaaaaagtagtgtgttcttttctc |
34770856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 34781365 - 34781205
Alignment:
| Q |
81 |
tttgtaaaaattgaatggaataaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatc |
180 |
Q |
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| T |
34781365 |
tttgtaaaaattgaatggaataaaatggat--tataatataatgcatttcatcgtataccatcatctcttattatttttctttcctcc--atgaaacatc |
34781270 |
T |
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| Q |
181 |
ttaattttgtaattactattttatccctgatc-ttttatttgaaaaagtagtgtgttcttctctc |
244 |
Q |
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| T |
34781269 |
ttaattttaaaattactattttatctctaatctttttatttgaacaagtagtgtgtccttttctc |
34781205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 11549556 - 11549489
Alignment:
| Q |
177 |
catcttaattttgtaattactattttatccctgatcttttatttgaaaaagtagtgtgttcttctctc |
244 |
Q |
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| T |
11549556 |
catcttaattttgtaattactattctatccctgatcttttatttgaaaaagtagtgtgtccttttctc |
11549489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34795329 - 34795285
Alignment:
| Q |
1 |
tcaattgattcaaacttcgttagctctttttattattgttattat |
45 |
Q |
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| T |
34795329 |
tcaattgagtcaaacttcgttggctctatttattattgttattat |
34795285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 34777720 - 34777675
Alignment:
| Q |
87 |
aaaattgaatggaataaaatggattatatagtagaatgcattccatca |
134 |
Q |
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| T |
34777720 |
aaaattgaatggaataaaatggat--gatagtagaatggattccatca |
34777675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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