View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1641_low_16 (Length: 234)

Name: NF1641_low_16
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1641_low_16
NF1641_low_16
[»] chr3 (13 HSPs)
chr3 (1-220)||(23351875-23352093)
chr3 (1-220)||(23439846-23440061)
chr3 (1-220)||(23472381-23472596)
chr3 (27-213)||(23386235-23386421)
chr3 (27-213)||(23404609-23404795)
chr3 (27-213)||(23463240-23463426)
chr3 (32-169)||(23454024-23454161)
chr3 (32-210)||(23478554-23478728)
chr3 (32-213)||(23447254-23447431)
chr3 (32-213)||(23499033-23499210)
chr3 (32-135)||(23468503-23468605)
chr3 (27-146)||(36002510-36002629)
chr3 (27-145)||(36023603-36023721)
[»] scaffold0201 (1 HSPs)
scaffold0201 (30-218)||(11407-11595)
[»] chr4 (1 HSPs)
chr4 (27-141)||(12896917-12897031)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 23351875 - 23352093
Alignment:
Q  1 tgctcccgttggatatattataataaatatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23351875 tgctcccgttggatatattataataaatatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttctgtact 23351974  T
Q  101 atcgaatattataccttccacaacttcagttccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatatttta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  23351975 atcgaatattataccttccacaacttcagttccctgacaaacaaaaattagattaatcattaagaaaggttg-catatgtactttatttgttatatttta 23352073  T
Q  201 taatcacatacatatatttt 220  Q
    ||||||||||||||||||||    
T  23352074 taatcacatacatatatttt 23352093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 23439846 - 23440061
Alignment:
Q  1 tgctcccgttggatatattataataaatatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtact 100  Q
    ||||||||||||||||||||| |   || | ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  23439846 tgctcccgttggatatattatga---atcttaagatatcttaagtttgccatccttctaaaggaatcagacttcaagtatagatccccaacttccgtagt 23439942  T
Q  101 atcgaatattataccttccacaacttcagttccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatatttta 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |||||||| ||||||  |||||||||||||    
T  23439943 atcgaatattataccttccacaacttcagttccctgac-aacaaaaattagattaataattaggaaaggctgtcatatgtactttcattgttatatttta 23440041  T
Q  201 taatcacatacatatatttt 220  Q
    |||| |||||||||||||||    
T  23440042 taattacatacatatatttt 23440061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 23472381 - 23472596
Alignment:
Q  1 tgctcccgttggatatattataataaatatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtact 100  Q
    ||||||||||||||||||||| |   || | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23472381 tgctcccgttggatatattatga---atcttaagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtatagatccccaacttccgtact 23472477  T
Q  101 atcgaatattataccttccacaacttcagttccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatatttta 200  Q
    ||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||| |||| |||||| |||||||| ||||||  |||||||||||||    
T  23472478 atcgaatattataccttccccaactttagttccctgac-aacgaaaattagattaataattaggaaaggctgtcatatgtactttcattgttatatttta 23472576  T
Q  201 taatcacatacatatatttt 220  Q
    |||| |||||||||||||||    
T  23472577 taattacatacatatatttt 23472596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 23386235 - 23386421
Alignment:
Q  27 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaactt 126  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23386235 atattaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtatagatccccaacttccgtactatccaatattataccttccacaactt 23386334  T
Q  127 cagttccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatattttataatcacatacat 213  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| |||||| | ||||||  ||||||||||||||||||||||||||    
T  23386335 cagttccctgacaaataaaaattagattaataattaggaaaggctgtcatgtgtactttccttgttatattttataatcacatacat 23386421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 23404609 - 23404795
Alignment:
Q  27 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaactt 126  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||    
T  23404609 atattaagatatcttaagtttgtcatccttctaaaggaatcagacttcaagtaaatatccccaacatccgtactatcgaatattataccttccacaactt 23404708  T
Q  127 cagttccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatattttataatcacatacat 213  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| |||||| | ||||||  | ||||||||||||||||||||||||    
T  23404709 cagttccctgacaaataaaaattagattaataattaggaaaggctgtcatgtgtactttcctcgttatattttataatcacatacat 23404795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 23463240 - 23463426
Alignment:
Q  27 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaactt 126  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||||||||| | ||||||||| |  ||||||| |||  ||||||||||||||||||    
T  23463240 atatgaagatatcttaaatttgtcatccttctaaaggaatcagacttcaagtaaatatccccaacatttgtactatggaaccttataccttccacaactt 23463339  T
Q  127 cagttccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatattttataatcacatacat 213  Q
    ||||||||||||||| ||||||||||||||| |||| |||||| |||||| | ||||||  | ||||||||||||||||||||||||    
T  23463340 cagttccctgacaaataaaaattagattaataattaggaaaggctgtcatgtgtactttcctcgttatattttataatcacatacat 23463426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 23454024 - 23454161
Alignment:
Q  32 aagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaacttcagtt 131  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||| |||||||| ||| ||||||||||||||||| | |||    
T  23454024 aagatatcttaagtttgtcatccttctaaaggaatcagactttaagtaaagattcccaacttctgtactatcaaatgttataccttccacaactcccgtt 23454123  T
Q  132 ccctgacaaacaaaaattagattaatcattaagaaagg 169  Q
    ||||  ||||||||||| |||||| | |||| ||||||    
T  23454124 ccctaccaaacaaaaatcagattattaattaggaaagg 23454161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 23478554 - 23478728
Alignment:
Q  32 aagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaacttcagtt 131  Q
    |||||||||||| ||| |||||||| ||||||||| |||||||||||| |||||||| || || |||||||||||| |||| ||||| ||| ||||||||    
T  23478554 aagatatcttaaatttttcatccttctaaaggaattagacttcaagtaaagatcccccacatctgtactatcgaatgttatcccttcgacagcttcagtt 23478653  T
Q  132 ccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatattttataatcacata 210  Q
    |||||    | |||||||| |||||| |||| ||| | |||||| |||||||||  ||||||||||| |||||||||||    
T  23478654 ccctg----ataaaaattacattaataattaggaatgattgtcacatatactttccttgttatatttcataatcacata 23478728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 23447254 - 23447431
Alignment:
Q  32 aagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaacttcagtt 131  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||| |||||||| || || |||||||||||| |||| ||||| ||| ||| ||||    
T  23447254 aagatatcttaaatttgtcatccttctaaaggaattagacttcaagtaaagatcccccacatctgtactatcgaatgttatcccttcgacagctttagtt 23447353  T
Q  132 ccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatattttataatcacatacat 213  Q
    |||||    | |||||||| |||||| |||| ||| ||||||||  ||||||||  ||||||||||| ||||||| ||||||    
T  23447354 ccctg----ataaaaattaaattaataattaggaatggttgtcacgtatactttccttgttatatttcataatcaaatacat 23447431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 23499033 - 23499210
Alignment:
Q  32 aagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaacttcagtt 131  Q
    |||||||||||| |||||||||| | ||||||||| |||||||||||| |||||||| || || |||||||||||| |||| ||||| ||| ||| ||||    
T  23499033 aagatatcttaaatttgtcatccatctaaaggaattagacttcaagtaaagatcccccacatctgtactatcgaatgttatcccttcgacagctttagtt 23499132  T
Q  132 ccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatattttataatcacatacat 213  Q
    |||||    | |||| ||| |||||| |||| ||| | |||||| |||||||||  ||||||||||| ||||||| ||||||    
T  23499133 ccctg----ataaaagttaaattaataattaggaatgattgtcacatatactttccttgttatatttcataatcaaatacat 23499210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 23468503 - 23468605
Alignment:
Q  32 aagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaacttcagtt 131  Q
    |||||||||||  ||| |||||||| ||||||||||||||||||| || ||||||||||| || |||| || |||  |||||||||||||| ||||||||    
T  23468503 aagatatcttatatttttcatccttctaaaggaatcagacttcaa-taaagatccccaacatctgtacaatggaacgttataccttccacagcttcagtt 23468601  T
Q  132 ccct 135  Q
    ||||    
T  23468602 ccct 23468605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 36002510 - 36002629
Alignment:
Q  27 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaactt 126  Q
    |||| ||||||||||||||| ||||| |||||||| ||| ||||  ||||||||||||||||||  ||   | ||||||| | |||| |||| |||||||    
T  36002510 atatgaagatatcttaagttggtcatgcttttaaatgaagcagagctcaagtatagatccccaaagtcacaaatatcgaaaaatataacttcaacaactt 36002609  T
Q  127 cagttccctgacaaacaaaa 146  Q
    ||||||||||| ||||||||    
T  36002610 cagttccctgaaaaacaaaa 36002629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 36023603 - 36023721
Alignment:
Q  27 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaactt 126  Q
    |||| |||| |||||||||| ||||| |||||||||||||||||  ||||||||||||| | || ||| | | | |||||||| ||  |||| |||||||    
T  36023603 atatgaagacatcttaagttggtcatgcttttaaaggaatcagaggtcaagtatagatctctaatttctgaaatgtcgaatatgatgacttcaacaactt 36023702  T
Q  127 cagttccctgacaaacaaa 145  Q
    | ||||||| | |||||||    
T  36023703 cggttccctaaaaaacaaa 36023721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 11407 - 11595
Alignment:
Q  30 tcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaacttcag 129  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||    
T  11407 tcaagatatcttaagtttgtcatccttttaaaggaatctggcttcaagtatagatcctcaacttccgtactatggaattttataccttccacaacatcag 11506  T
Q  130 ttccctgacaaacaaaaattagattaatcattaagaaaggttgtcatatatactttatttgttatattttataatcacatacatatatt 218  Q
    |||||||| ||||||||||||||||| | |||| ||||||  ||| ||| ||||||  |||||||||| |||||||| |||||||||||    
T  11507 ttccctgagaaacaaaaattagattagtaattaggaaaggaagtcttatgtactttccttgttatattatataatcagatacatatatt 11595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 12897031 - 12896917
Alignment:
Q  27 atatcaagatatcttaagtttgtcatccttttaaaggaatcagacttcaagtatagatccccaacttccgtactatcgaatattataccttccacaactt 126  Q
    |||| ||||||||||||||| |||||  ||||||| ||||||||  ||||||||||||||| |  ||  | | ||| |||||||||| |||| | |||||    
T  12897031 atatgaagatatcttaagttggtcatgtttttaaatgaatcagagctcaagtatagatccctagttttagaaatattgaatattataacttcaataactt 12896932  T
Q  127 cagttccctgacaaa 141  Q
    ||| ||||| |||||    
T  12896931 cagatccctaacaaa 12896917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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