View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1641_low_2 (Length: 502)
Name: NF1641_low_2
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_2 |
 | |
|
| [»] chr3 (20 HSPs) |
| |
|
| [»] scaffold0201 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 6 - 502
Target Start/End: Original strand, 23351349 - 23351843
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23351349 |
gagagatgaacagccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
23351448 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23351449 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtctg |
23351548 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23351549 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataagaaataaacatgcatgagttttgattaaaagag |
23351648 |
T |
|
| Q |
306 |
aaacaaaacctagctctactgcaattttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagcttgctatgagtcat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23351649 |
aaacaaaacctagctctactgcaattttgtgaatagcattaga--cttcctcttgtacctgaactccatcccagagctttttaagcttgcaatgagtcat |
23351746 |
T |
|
| Q |
406 |
gtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaagggacatcaatttatcagaaagacac |
502 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
23351747 |
gtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaaggtacctcaatttatcagaaagacac |
23351843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 23385687 - 23386178
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| || |
|
|
| T |
23385687 |
gagagatgaacaaccattgagtaaaagtacacagagagattttgaatgaatgttggatttaaggctttcaatctttatgcaacctcttaaatctagatat |
23385786 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||||||||| |||||||||||||||| | |
|
|
| T |
23385787 |
ataattcgagggagagaaaagatggatggatggagctgacgcaggctttcacattccgagagatgtattctgtcaagatttatagccctagataagtctg |
23385886 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagag |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || | |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
23385887 |
ggatctcaatcagatctttggaggattcaagccaaagtactcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagag |
23385986 |
T |
|
| Q |
306 |
aaacaaaa-------------cctagctctactgcaattttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagct |
392 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23385987 |
aaacaaaacctagttaaacatcctagctctgctgcaattttgtgaaaaacat-------------ttgtacctgaactccatcccagagctttttaagct |
23386073 |
T |
|
| Q |
393 |
tgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaagggacatcaatttatc |
492 |
Q |
| |
|
|||| ||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||| || |||||||||| |
|
|
| T |
23386074 |
tgctttgattcatgcaaagctctacaagcatttcagcacaaaaggttgatggcaaagactcaagacagtatcttttccatcgaagatacctcaatttatc |
23386173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 23404058 - 23404549
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||| |||||| || |
|
|
| T |
23404058 |
gagagatgaacaaccattgagtaagagttgacaaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatat |
23404157 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||| | ||||||||||||||||||||||||| | |
|
|
| T |
23404158 |
tgaagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaatagcaagatttgtagccctagataagtctg |
23404257 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagag |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |||| || || |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
23404258 |
ggatctcaatcagatctttggaggattcaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagag |
23404357 |
T |
|
| Q |
306 |
aaacaaaa-------------cctagctctactgcaattttgagaataacattagatcattcctcttgtacctgaactccatcccagagctttttaagct |
392 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23404358 |
aaacaaaacctagttaaacatcctagctctgctgcaattttgtgaaaaacat-------------ttgtacctgaactccatcccagagctttttaagct |
23404444 |
T |
|
| Q |
393 |
tgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaagggacatcaatttatc |
492 |
Q |
| |
|
|||| |||| |||| |||||| | |||||||||||||||||| |||||||||||||||||||||||||||| | |||| |||| || |||||||||| |
|
|
| T |
23404445 |
tgctttgagccatgcaaagctctacaagcatttcagcacaaaaagttgatggcaaagactcaagacaatatcttttccatcgaagatacctcaatttatc |
23404544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 23439251 - 23439564
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||||||||||| | ||| |||| || ||||||||||||||||||||| ||||||||||||||||| | |||||| || |||||||||||||| |
|
|
| T |
23439251 |
gagagatgaacaaccatccagtaagagttcacgaagagattttgaatgaatgttcgttttaaggctttcaatagtaatgcaacctcctaaatctagaaat |
23439350 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||| | |
|
|
| T |
23439351 |
gtaagtcgagggagagaaaagatggatggatggagctgacgcaagctttcacattgacagagagatgctcttccaagatttgtagccctagataagtcgg |
23439450 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttaga-ttcacaagattctgtaataataaataaacatgcatgagttttgattaaaaga |
304 |
Q |
| |
|
||||||||||||||||||||||| | | ||| |||| ||||| || |||||||||||||| || |||||||||||||| ||| |||||||||||| |
|
|
| T |
23439451 |
ggatctcaatcagatctttggagtaattaaggcagattgtgattagattttacaagattctgtaacaagaaataaacatgcataagtgttgattaaaaga |
23439550 |
T |
|
| Q |
305 |
gaaacaaaacctag |
318 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
23439551 |
gaaacaaaacctag |
23439564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 23471787 - 23472099
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||||||||||| | |||||||| || | ||||| ||||||||||| ||||||||||||||||| |||||||||||| || |||||||||| | |
|
|
| T |
23471787 |
gagagatgaacaaccatcaagtttaaggtttcggagagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtaca |
23471886 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | |||||| |||| ||||||||||||||||||||||||||| | |
|
|
| T |
23471887 |
ataagtcgagggagagaaaagatgtatggatggagatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttg |
23471986 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagag |
305 |
Q |
| |
|
||||||||||||||||||||||| | | ||| ||| || |||||||||||||||||||||| || |||||||||||||| ||| | ||||||||||| |
|
|
| T |
23471987 |
ggatctcaatcagatctttggagtaattaaggctaaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagag |
23472086 |
T |
|
| Q |
306 |
aaacaaaacctag |
318 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23472087 |
aaacaaaacctag |
23472099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 6 - 318
Target Start/End: Original strand, 23462677 - 23462989
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||||||||||| |||| |||| || ||||||||||||||||||||| ||||||||||||||||| |||||||| || ||| |||||| || |
|
|
| T |
23462677 |
gagagatgaacaaccattgagtaagagttgacgaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatat |
23462776 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| | |
|
|
| T |
23462777 |
tgaagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaacaacaagatttgtagccctagataagtctg |
23462876 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagag |
305 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
23462877 |
ggatctcaatcagatctttggaggatcgaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagag |
23462976 |
T |
|
| Q |
306 |
aaacaaaacctag |
318 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23462977 |
aaacaaaacctag |
23462989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 23446652 - 23446926
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||| ||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| || |
|
|
| T |
23446652 |
gagagatgcacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcagtctcgtaaatctagatat |
23446751 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||| | ||||||||||||| |||||||||| | |
|
|
| T |
23446752 |
ctaagatcagggagagaaaagatggaaggatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctg |
23446851 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaa |
280 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23446852 |
ggatctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaaaaagaaataaa |
23446926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 23498401 - 23498675
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||| ||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| || |
|
|
| T |
23498401 |
gagagaagaacaaccatcgagtaagagttcacaaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatat |
23498500 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||| ||||||||||||||| || | ||||||||||| |||||||||||||||| | ||||||||||| | ||||||||||||| |||||||||| | |
|
|
| T |
23498501 |
ctaagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctg |
23498600 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaa |
280 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| || | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23498601 |
ggatctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
23498675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 39 - 280
Target Start/End: Original strand, 23477985 - 23478226
Alignment:
| Q |
39 |
aagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaatataagtcgagggagagaaaagatggatggatgg |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| || |||| ||||||||||||||| || | |||| |
|
|
| T |
23477985 |
aagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatcagggagagaaaagatagaagaatgg |
23478084 |
T |
|
| Q |
139 |
agctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcagggatctcaatcagatctttggaggattgaagca |
238 |
Q |
| |
|
||||||| |||||||||||||||| | ||||||||||| | ||||||||||||| |||||||||| |||||||||||||||| ||||||||||| |||| |
|
|
| T |
23478085 |
agctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctcaatcagatttttggaggattcaagcc |
23478184 |
T |
|
| Q |
239 |
taattgatcttagattcacaagattctgtaataataaataaa |
280 |
Q |
| |
|
|| | |||||||||||||||||||||| || ||||||| |
|
|
| T |
23478185 |
aaagtatgtttagattcacaagattctgtaacaagaaataaa |
23478226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 358 - 498
Target Start/End: Original strand, 23472205 - 23472345
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||| || |
|
|
| T |
23472205 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaagtttgatggaaaagactcagga |
23472304 |
T |
|
| Q |
458 |
caatatccatcccattgaagggacatcaatttatcagaaag |
498 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
23472305 |
caatatccctcccattgaaggtacctcaatttatcagaaag |
23472345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 23453428 - 23453702
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
||||| |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| || |
|
|
| T |
23453428 |
gagagttgaacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatat |
23453527 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
|||| ||||||| | |||||||| ||||||||||||| |||||||||||||| || | | |||| | |||||||||| || |||||||||| | |
|
|
| T |
23453528 |
ctaagatcagggagacagaagatggaaggatggagctgacacaggctttcacatt----gaaaaacactccatgaagatttgtatccttagataagtctg |
23453623 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaacatg |
284 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23453624 |
ggatctcaatcagatctttggaggattcaagccggagtatgtttagattcacaagattctgtaacaataaataaacatg |
23453702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 358 - 498
Target Start/End: Original strand, 23439670 - 23439810
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
457 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
23439670 |
ttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcatttcagcacaaaagtttgatggaaaagactaaaga |
23439769 |
T |
|
| Q |
458 |
caatatccatcccattgaagggacatcaatttatcagaaag |
498 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
23439770 |
caatatccctcccattgaaggtacctcaatttatcagaaag |
23439810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 358 - 497
Target Start/End: Original strand, 23447050 - 23447189
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
457 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23447050 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaaggttgatggcaaatactcaaga |
23447149 |
T |
|
| Q |
458 |
caatatccatcccattgaagggacatcaatttatcagaaa |
497 |
Q |
| |
|
|| ||||| |||||| |||| || ||||||||||||||| |
|
|
| T |
23447150 |
cagtatccttcccatcgaagatacctcaatttatcagaaa |
23447189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 358 - 497
Target Start/End: Original strand, 23478350 - 23478489
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
457 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23478350 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaaggttgatggcaaaaactcaaga |
23478449 |
T |
|
| Q |
458 |
caatatccatcccattgaagggacatcaatttatcagaaa |
497 |
Q |
| |
|
|| ||||| |||||| |||| || ||||||||||||||| |
|
|
| T |
23478450 |
cagtatccttcccatcgaagatacctcaatttatcagaaa |
23478489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 358 - 497
Target Start/End: Original strand, 23498829 - 23498968
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
457 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23498829 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaaggttgatggcaaatactcaaga |
23498928 |
T |
|
| Q |
458 |
caatatccatcccattgaagggacatcaatttatcagaaa |
497 |
Q |
| |
|
|| ||||| |||||| |||| || ||||||||||||||| |
|
|
| T |
23498929 |
cagtatccttcccatcgaagatacctcaatttatcagaaa |
23498968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 358 - 498
Target Start/End: Original strand, 23453820 - 23453960
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23453820 |
ttgtacctgaactccatcccagagctttttaagcttgctatgacccatgtgaagctctatgagcatttcagcacaaaaggttggtggcaaagactcaagg |
23453919 |
T |
|
| Q |
458 |
caatatccatcccattgaagggacatcaatttatcagaaag |
498 |
Q |
| |
|
|| ||||| ||||| |||| || ||||||||| |||||| |
|
|
| T |
23453920 |
cagtatccctcccacataaggaacctcaatttattagaaag |
23453960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 358 - 497
Target Start/End: Original strand, 23463041 - 23463180
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaaga |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23463041 |
ttgtacctgaactccatcccagagctttttaagcttgctatgactcatgcaaagatatacaagcatttcagcacaaaaggttgatggcaaagactcaaga |
23463140 |
T |
|
| Q |
458 |
caatatccatcccattgaagggacatcaatttatcagaaa |
497 |
Q |
| |
|
|| |||| ||||| |||| || ||||||||||||||| |
|
|
| T |
23463141 |
cagtatcttacccatagaagatacctcaatttatcagaaa |
23463180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 418 - 497
Target Start/End: Original strand, 23468359 - 23468438
Alignment:
| Q |
418 |
aagcatttcagcacaaaaggttgatggcaaagactcaagacaatatccatcccattgaagggacatcaatttatcagaaa |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
23468359 |
aagcatttcagcacaaaaggttgatggcaaagattcaagacagtatccatcccatcgaaggtacctcaatttatcagaaa |
23468438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 36001906 - 36001953
Alignment:
| Q |
39 |
aagagattttgaatgaatgttggttttaaggctttcaatctttatgca |
86 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
36001906 |
aagagattttgaatgaatgttggttttcaggcttttaatctttttgca |
36001953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 36002287 - 36002327
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctat |
398 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
36002287 |
ttgtacctgaattccatcccatagctttttaagtttgctat |
36002327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 10822 - 11125
Alignment:
| Q |
6 |
gagagatgaacaaccaccgagtttaagtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaat |
105 |
Q |
| |
|
|||||||||||||||| |||| |||| || ||||||||||||||||| | || ||||||||||||||| ||||||||| || |||||||||| | |
|
|
| T |
10822 |
gagagatgaacaaccattgagtaaaagtacacggagagattttgaatgaatctcggctttaaggctttcaatatttatgcaacctcgtaaatctagataa |
10921 |
T |
|
| Q |
106 |
ataagtcgagggagagaaaagatggatggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtcag |
205 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| |||||||| |||| ||||||||||||||| |||||||| | |
|
|
| T |
10922 |
tcaagtcgagggagagaaaggatggatgtatggagctgacgcaggcttttacattgagtgagatatagactttgaagatttgtagccctggataagtctg |
11021 |
T |
|
| Q |
206 |
ggatctcaatcagatctttggaggattgaagcataattgatcttagattcacaagattctgtaataataaataaacatgcatgagttttgattaaaagag |
305 |
Q |
| |
|
|| |||||| |||||||| ||| | ||||| || | ||||||||||||||| |||||| || ||||||||| |||||||| ||||||||||||| |
|
|
| T |
11022 |
agagctcaatgagatctttagagtttggaagcgaaagaactgttagattcacaagatcctgtaacaagaaataaacaagcatgagtgttgattaaaagag |
11121 |
T |
|
| Q |
306 |
aaac |
309 |
Q |
| |
|
|||| |
|
|
| T |
11122 |
aaac |
11125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 361 - 498
Target Start/End: Original strand, 11205 - 11342
Alignment:
| Q |
361 |
tacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaagacaa |
460 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| || |||||||| | ||||||| |||| |||||||||||||||||||||||||| | |
|
|
| T |
11205 |
tacctgaactccttcccagagctttttaagcttgctatgacgcaattgaagctctacgagcattttagcagaaaaggttgatggcaaagactcaagagag |
11304 |
T |
|
| Q |
461 |
tatccatcccattgaagggacatcaatttatcagaaag |
498 |
Q |
| |
|
|||| ||||| |||||| || |||||||||||||||| |
|
|
| T |
11305 |
tatctttcccaatgaaggtacctcaatttatcagaaag |
11342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 456
Target Start/End: Original strand, 16121426 - 16121524
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaag |
456 |
Q |
| |
|
||||||||||| || |||||| |||||| ||||||||||||| |||||| ||| || | |||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
16121426 |
ttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttctacaagcttttgaggacaaaaggttgatggcaaagactcaag |
16121524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 358 - 456
Target Start/End: Complemental strand, 16337742 - 16337644
Alignment:
| Q |
358 |
ttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaag |
456 |
Q |
| |
|
||||||||||| || |||||| |||||| ||||||||||||| |||||| ||| | | ||| ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
16337742 |
ttgtacctgaattctatcccaaagctttctaagcttgctatgggtcatgctaagttgtacaaggttttgagcacaaaaggttgatggcaaagattcaag |
16337644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 12897603 - 12897546
Alignment:
| Q |
40 |
agagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaat |
97 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| ||||| ||| ||||| |
|
|
| T |
12897603 |
agagattttgaatgaatgttagttttcaggctttcaatctttttgcaaccttttaaat |
12897546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 359 - 456
Target Start/End: Complemental strand, 12897241 - 12897144
Alignment:
| Q |
359 |
tgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctcaataagcatttcagcacaaaaggttgatggcaaagactcaag |
456 |
Q |
| |
|
|||||||||| | ||| ||| |||||||||||||||||||| |||| ||| | | |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
12897241 |
tgtacctgaatttcattccaaagctttttaagcttgctatggcgcatgctaagttgtacaagccattcggcacaaaaggttgatggcaaagactcaag |
12897144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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