View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641_low_4 (Length: 373)
Name: NF1641_low_4
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 4890384 - 4890743
Alignment:
| Q |
1 |
aaattgactttgatatcattaattaataaatttaaatgtaatctcgatccctctattttgacaaaaattaaccttcgttcccaatttttacgagaatttt |
100 |
Q |
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| T |
4890384 |
aaattgactttgatatcattaattaataaatttaaatgtaatctcgatccctctattttgacaaaaattaaccttcgttcccaatttttacgagaatttt |
4890483 |
T |
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| Q |
101 |
ggtccaattttgacaaaaacttagcatgatttatttgtccccgaccatttt-ttattacatgacatcatcattaataatttgtggcacagctgagttgag |
199 |
Q |
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| T |
4890484 |
ggtccaattttgacaaaaacttagcatgatttatttgtacccggccatttttttattacatgacatcatcattaataatttgtggcacagctgagttgag |
4890583 |
T |
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| Q |
200 |
gatcttgaattgaaacggtgctgcctttgcaaaatcaagcttctcaagctcaacaaccatgagatctcgaagcttctttgagagacgaagatcgaggatt |
299 |
Q |
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| T |
4890584 |
gatcttgaattgaaacggtgctgcctttgcaaaatcaagcttctcaagctcaacaaccatgagatctcgaagcttctttgagagacgaagatcgaggatt |
4890683 |
T |
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| Q |
300 |
gggtgtcggaggagctacgtggagcggtggaggttgaagagttgttgtaccacatcactg |
359 |
Q |
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| T |
4890684 |
gggtgtcggaggagctatgtggagcggtggaggttgaagagttgttgtaccacatcactg |
4890743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 50921450 - 50921339
Alignment:
| Q |
185 |
cacagctgagttgaggatcttgaattgaaacggtgctgcctttgcaaaatcaagcttctcaagctcaacaaccatgagatctcgaagcttctttgagaga |
284 |
Q |
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|||| ||||||||||||||| || |||| | ||||| |||||| ||||||| ||||| | |||||||||||||| |||||| ||||||||| ||||| |
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| T |
50921450 |
cacaactgagttgaggatctcgacatgaa-ctgtgctacctttgtgaaatcaaacttctgaggctcaacaaccatgggatctcaaagcttcttccagaga |
50921352 |
T |
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| Q |
285 |
cgaagatcgagga |
297 |
Q |
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| T |
50921351 |
agaagatcgagga |
50921339 |
T |
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