View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1641_low_5 (Length: 369)
Name: NF1641_low_5
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 54074610 - 54074259
Alignment:
| Q |
1 |
tgcagcaaataaaagaatagaaagtaatgaaagaaggagggttgttcgtggttttcgtcgcatggtttcccaaggactactaatgaatgtttttgttgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
54074610 |
tgcagcaaataaaagaatagaaagtaatgaaagaaggagggttgttcgtggttttcgtcgcatggtttcccaaggactactaatgaatgttgttgttgaa |
54074511 |
T |
|
| Q |
101 |
ttgttaatggaaatattggaatctgatggtgaagaaggtttcatattcatatgttctatatgagtgaaaactgaaaagtgtgatgaaatttgttacagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||| |
|
|
| T |
54074510 |
ttgttaatggaaatattggaatctgatggtgaagaaggtttcatattcatattttctatatgagtgaaaagt----ag------------tgttacagat |
54074427 |
T |
|
| Q |
201 |
agatagatagataga--------------gaggtgaaatcagcactcgtttttgagttttattcataaataggaatggattgggaatatgaaagatatag |
286 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
54074426 |
agatagatagatagagagggggatggtgtgaggtgaaatcagcactcg-ttttgagttttattcatagataggaatgaattgggaatatgaaagatatag |
54074328 |
T |
|
| Q |
287 |
acactactcac---ataataataattgtagaatgttttatgttattaggtaatgatttgattgtgattg |
352 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54074327 |
acactactcacataataataataattgtagaatgttttatgttattaggtaatgatttgattgtgattg |
54074259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University