View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641_low_8 (Length: 353)
Name: NF1641_low_8
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 30 - 336
Target Start/End: Complemental strand, 40615420 - 40615118
Alignment:
| Q |
30 |
ttgacaaaacatcttgatatgataaattgcgggtaattttagttcaaattaatgttatctttagttagcactttcagatcggtccctaaagttgaaaccc |
129 |
Q |
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| T |
40615420 |
ttgacaaaacatcttgatatgataaattgcgggtaattttagttcaaat----gttatctttagttagcactttcagattggtccctaaagttgaaaccc |
40615325 |
T |
|
| Q |
130 |
taaaatcagatggatccgtaaaataaataaatacccaaacaattcagtctctgaaatgtagagcaacatcaagttagtcatatagattatcaatatattc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40615324 |
taaaatcagatggatccgtaaaataaataaatacccaaacaattcagtctctgaaatgtagagcaacatcaagttagtcatatagattatcaatatattc |
40615225 |
T |
|
| Q |
230 |
aaaaatatgattattatcaaatagacaaataaatatttacctagggttgtcagtacaagagaaacgagtaatgtcaacctcgtcaataagaatatttaca |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40615224 |
aaaaatatgattattatcaaatagacaaataaatatttatctagggttgtcagtacaagagaaacgagtaatgtcaacctcgtcaataagaatatttaca |
40615125 |
T |
|
| Q |
330 |
tccttag |
336 |
Q |
| |
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||||||| |
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| T |
40615124 |
tccttag |
40615118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 40612914 - 40612811
Alignment:
| Q |
153 |
taaataaatacccaaacaattcagtctctgaaatgta--gagcaacatcaagttagtcatatagattatcaatatattcaaaaatatgattattatcaaa |
250 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| ||| |
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| T |
40612914 |
taaataaatacccacccaattcagtctctgaaatgtatagagcaacatcaagttagtcatatagattatcaatatatttcaaaaaatgatttttataaaa |
40612815 |
T |
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| Q |
251 |
taga |
254 |
Q |
| |
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|||| |
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| T |
40612814 |
taga |
40612811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 40611227 - 40611178
Alignment:
| Q |
287 |
agagaaacgagtaatgtcaacctcgtcaataagaatatttacatccttag |
336 |
Q |
| |
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||||||| ||||||| |||| |||||||||||||||||||| |||||||| |
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| T |
40611227 |
agagaaatgagtaatatcaatctcgtcaataagaatatttaaatccttag |
40611178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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