View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1641_low_9 (Length: 264)
Name: NF1641_low_9
Description: NF1641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1641_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 40059552 - 40059784
Alignment:
| Q |
18 |
catggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtga |
117 |
Q |
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| T |
40059552 |
catggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtga |
40059651 |
T |
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| Q |
118 |
aatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaa |
217 |
Q |
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| T |
40059652 |
aatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaa |
40059751 |
T |
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| Q |
218 |
tttatgtgtgatatttttctggggtgttcatct |
250 |
Q |
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| T |
40059752 |
tttatgtgtgatatttttctggggtgttcatct |
40059784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 40077652 - 40077827
Alignment:
| Q |
36 |
taaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgtgaaggcagtgg |
135 |
Q |
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| T |
40077652 |
taaggttagaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtgg |
40077751 |
T |
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| Q |
136 |
ctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggt |
211 |
Q |
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| T |
40077752 |
ctgaggcaggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggt |
40077827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 248
Target Start/End: Original strand, 40085446 - 40085665
Alignment:
| Q |
25 |
ttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattttgatgagaggaaggatttagtgaaatttgt |
124 |
Q |
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| T |
40085446 |
ttgatctactataagctaagaaagtctatcttaattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttggtgaaatttgt |
40085545 |
T |
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| Q |
125 |
gaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaagtttggttggtaatttatgt |
224 |
Q |
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| T |
40085546 |
gaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaaagtttgg----taatttatgt |
40085641 |
T |
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| Q |
225 |
gtgatatttttctggggtgttcat |
248 |
Q |
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| T |
40085642 |
gtattatatttcgagggtgttcat |
40085665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 22015910 - 22015825
Alignment:
| Q |
119 |
atttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaactatgggtaaa |
204 |
Q |
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| T |
22015910 |
atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaaa |
22015825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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