View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642-INSERTION-1 (Length: 410)
Name: NF1642-INSERTION-1
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-INSERTION-1 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 8068989 - 8069179
Alignment:
| Q |
8 |
aattagtgaaagggagagctatatattccatacatataagacatgatatcatgatgaagatgatgaatcccacaacagaaagacattactaggtttcttt |
107 |
Q |
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| T |
8068989 |
aattagtgaaagggagagctatatattccatacatataagacatgatatcatgatgaagatgatgaatcccacaacagaaagacattactaggtttcttt |
8069088 |
T |
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| Q |
108 |
gcaatttgcaccaaacctagttaatttttaattattaatannnnnnnatcaagataatattgtaagcagttagccacaaaagacaaaagga |
198 |
Q |
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| T |
8069089 |
gcaatttgcaccaaacctagttaatttttaattattaatatttttttatcaagataatattgtaagcagttagacacaaaagacaaaagga |
8069179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Original strand, 8069229 - 8069258
Alignment:
| Q |
252 |
gaataggtttgtgaaaactaccaacaaagt |
281 |
Q |
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| T |
8069229 |
gaataggtttgtgaaaactaccaacaaagt |
8069258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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