View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1642-INSERTION-2 (Length: 552)
Name: NF1642-INSERTION-2
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-INSERTION-2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 162 - 552
Target Start/End: Original strand, 50122395 - 50122804
Alignment:
| Q |
162 |
gaatatgtgggtgcataatatatgctactacgtgcgatttagactatgtttgtactttctgtaatcacattttggtttgtcaaatgtgattagaccataa |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50122395 |
gaatatgtgggtgcataatatatgctactacgtgcgatttagactatgtttgtactttctgtaatcacattttggtttgtcaaatgtgattagaccataa |
50122494 |
T |
|
| Q |
262 |
attgttatgtttggattttagaattgattcc--------------------ctaaaagttcatatttctattttctctcgcaacatagaataaattctca |
341 |
Q |
| |
|
||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50122495 |
attattatgtttggactttagaattgattccagtcttaagatcaattctacctaaaagttcatatttctattttctctcgcaacatagaataaattctca |
50122594 |
T |
|
| Q |
342 |
aatttgttgacataaatacaaaaccaactctgattcgtactatccaaacataaattgatatagttatttttgtgcaaatttattcaaatataaattattt |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
50122595 |
aatttgttgacataaatacaaaaccaactctgattcgtactatccaaacataaattgatatagttatttttgtgcaaatttattcaaa-attaattattt |
50122693 |
T |
|
| Q |
442 |
tacattcagctaattttcaatcaaaatcaatttttgttcgttaagagtcaaggatacacttacttgacatagaagcgtaaaagaggaatgtccacgccat |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50122694 |
tacattcagctaattttcaatcaaaatcaatttttgttcgttaagagtcaaggatacacttacttgacatagaagcttaaaagaggaatgtccacgccat |
50122793 |
T |
|
| Q |
542 |
aaatattgttc |
552 |
Q |
| |
|
||||||||||| |
|
|
| T |
50122794 |
aaatattgttc |
50122804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 147
Target Start/End: Original strand, 40363770 - 40363909
Alignment:
| Q |
8 |
catgcaagatccaatcagttctagacccattaggggatttcccttcatagaaaactagagttttccttagccctacaatgccattacaagttgaagatga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40363770 |
catgcaagatccaatcagttctagacccatttggggatttcccttcatagaaaactagagtttttcttagccctgcaatgccattacaagttgaagatga |
40363869 |
T |
|
| Q |
108 |
aannnnnnngtctgaccctgttgccttccaatatccacat |
147 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
40363870 |
aatttttttgtctgaccctgttgccttccaatatccacat |
40363909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 11458923 - 11458979
Alignment:
| Q |
224 |
aatcacattttggtttgtcaaatgtgattagaccataaattgttatgtttggatttt |
280 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||||| |||||| |||| |
|
|
| T |
11458923 |
aatcacattttggttaatcaaacgtgatttgaccataaattgttacgtttggctttt |
11458979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University