View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1642-INSERTION-5 (Length: 414)
Name: NF1642-INSERTION-5
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-INSERTION-5 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 33513051 - 33512645
Alignment:
| Q |
8 |
aaaagaagaatcttcaaacacccttttcttcatgtcaaaatctttaaatctagaaacaccagtgatttcggacaccgatcttttctcaccatcataatct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33513051 |
aaaagaagaatcttcaaacacccttttcttcatgtcaaaatctttaaatctagaaacaccagtgatttcggacaccgatcttttctcaccatcataatct |
33512952 |
T |
|
| Q |
108 |
tgaaattttgattccatgttattgaacctgttacttgatgaagcattaatcatttctgaattcaaaaacataagatcagaagaactaacattgctccatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33512951 |
tgaaattttgattccatgttattgaacctgttacttgatgaagcattaatcatttctgaattcaaaaacataagatcagaagaactaacattgctccatc |
33512852 |
T |
|
| Q |
208 |
tatgcttaaacacaacatcagatatagtaatcttgtgattatgcttatgataagctttattgttagaatcacttttttctataagcaattcttcttcctt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33512851 |
tatgcttaaacacaacatcagatatagtaatcttgtgattatgcttatgataagctttattgttagaatcacttttttctataagcaattcttcttcctt |
33512752 |
T |
|
| Q |
308 |
tgaaataatacctttttcttcttccttaaatatagtagtagcttttccaattttcctaaagctgcttccaatactaaaccttgatgaaccatgttgatta |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33512751 |
tgaaataatacctttttcttcttccttaaatatagtagtagcttttccaattttcctaaagctgcttccaatactaaaccttgatgaaccatgttgatta |
33512652 |
T |
|
| Q |
408 |
ttatctt |
414 |
Q |
| |
|
||||||| |
|
|
| T |
33512651 |
ttatctt |
33512645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University