View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642-INSERTION-6 (Length: 411)
Name: NF1642-INSERTION-6
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-INSERTION-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 7639436 - 7639841
Alignment:
| Q |
8 |
gttgtactagtgtcttaagttttcagaggatactattcatcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7639436 |
gttgtactagtgtcttaagttttcagaggatactattcagcttcttccttcatttcaaaatttgacacttctgtttctgagggctaacactttcactagt |
7639535 |
T |
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| Q |
108 |
gaagtagtaatggacattctcctaaagactcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgta |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |
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| T |
7639536 |
gaagtagtaatggacattctcctaaagactcctaatctgaaagctcttcattttcacgtggtaaatcttacatcatgcttcactactattgcattgcgta |
7639635 |
T |
|
| Q |
208 |
ccatgttttgaggttaagaaatac--taatattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttg |
305 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7639636 |
ccatgttttgaggttaagaaatactataatattacttatgtccattgacttgttcattaatttatttttatgtagggatctgtgtcattcatacatcttg |
7639735 |
T |
|
| Q |
306 |
aagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7639736 |
aagacgactggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatt |
7639835 |
T |
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| Q |
406 |
tattaa |
411 |
Q |
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|||||| |
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| T |
7639836 |
tattaa |
7639841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 7632744 - 7633124
Alignment:
| Q |
12 |
tactagtgtcttaagttttcagaggatactattcatcttcttccttcatttcaaaatttgacacatctgtttctgagggctaacactttcactagtgaag |
111 |
Q |
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||||||| |||| ||| |||| |||| ||| | |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
7632744 |
tactagtatcttgagtattcaaaggagactctccatcatcttccttcatttcaaaatttgacacatctgcttctgaggactaacactttcactagtgaag |
7632843 |
T |
|
| Q |
112 |
tagtaatggacattctcctaaagactcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccat |
211 |
Q |
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|||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||| | | || ||||| |
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| T |
7632844 |
tagtaacgggcattcttctaaagactcctaatctgaaagctcttcatattcatacggtacatcttcaatcatgcttaacctctattata-tatgaaccat |
7632942 |
T |
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| Q |
212 |
gttttgaggttaagaaatactaatattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacg |
311 |
Q |
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| T |
7632943 |
gtttcaaggat----------------actcatgtccattgacttgtttat--atttatttttctgtagcgatttgagtcattcatggatcttgaagacg |
7633024 |
T |
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| Q |
312 |
actggccattactttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaa |
411 |
Q |
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||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7633025 |
actggacattactttcagtgccttactgtttcgaatattctctcaaatcattttgcgtttcagattttcttggacttgaacaacatatccaatttattaa |
7633124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 31268050 - 31267996
Alignment:
| Q |
101 |
cactagtgaagtagtaatggacattctcctaaagactcctaatctgaaagctctt |
155 |
Q |
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| T |
31268050 |
cactagtgaagtactaatggacattctccgaaagactcctaaactggaagttctt |
31267996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 385
Target Start/End: Complemental strand, 31217585 - 31217525
Alignment:
| Q |
325 |
ttcagtgccttgctgtttcaaatattctctcaaatcattttgcgtttcagattttcgtgga |
385 |
Q |
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|||| |||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcatgtgatatttcagattttcgtgga |
31217525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 357
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
325 |
ttcagtgccttgctgtttcaaatattctctcaa |
357 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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