View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642-INSERTION-7 (Length: 202)
Name: NF1642-INSERTION-7
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-INSERTION-7 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 35875847 - 35875650
Alignment:
| Q |
8 |
acagctcctttttccctccaatctacagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatct |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
35875847 |
acagctcctttttccctccaatctacagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatct |
35875748 |
T |
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| Q |
105 |
ctatctttggtaagtaggttttactaaactcctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35875747 |
ctatctttggtaagtaggttttactaaactcctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgca |
35875650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 8 - 202
Target Start/End: Complemental strand, 24450048 - 24449851
Alignment:
| Q |
8 |
acagctcctttttccctccaatctacagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcc---ttggacggtatctgcatct |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
24450048 |
acagctcctttttccctccaatctacagaagtgggaaggttttcacaatcatcatcatctttaagctttgcgttgtcccgattggacggtacctgcatct |
24449949 |
T |
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| Q |
105 |
ctatctttggtaagtaggttttactaaactcctcaggattcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24449948 |
ctatctttggtaagtaggttttactaaactcctcaggactcatatcagcaaacttgttgagactcaaacgatgttgcgtttgtgattttctctttgca |
24449851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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