View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1642-Insertion-11 (Length: 454)
Name: NF1642-Insertion-11
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-Insertion-11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 112 - 454
Target Start/End: Complemental strand, 54986728 - 54986386
Alignment:
| Q |
112 |
atactaaatttcaaatttaatactgatgaaagaatagatcttgttacataattgaaatttgaacacattttcaagtgtaccatgattatcagtattagta |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54986728 |
atactaaatttcaaatttaataatgatgaaagaatagatcttgttacataattgaaatttgaacacattttcaagtgtaccatgattatcagtattagta |
54986629 |
T |
|
| Q |
212 |
tcttatgatacctctaattgtatctcaattcgatacaaacttgatctcaatcgaatctcaatccattttgatgtatcataatttgtccttaaacttggtg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54986628 |
tcttatgatacctctaattgtatctcaattcgatacaaacctgatctcaatcgaatctcaatccattttgatatatcataatttgtccttaaacttggtg |
54986529 |
T |
|
| Q |
312 |
aagccaatggttttatctcgtcactcggtagtcaagcctacnnnnnnnnnnnnnnnnnnnnnattgaggttcacaaatacatataagctaattttttgct |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54986528 |
aagccaatggttttatctcgtcactcggtagtcaagcctacttttctttttttgtcatttttattgaggttcacaaatacatataaactaattttttgct |
54986429 |
T |
|
| Q |
412 |
tgtcactgacacgttgttcattgctcatataccatacgattta |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54986428 |
tgtcactgacacgttgttcattgctcatataccatacaattta |
54986386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 54986831 - 54986794
Alignment:
| Q |
8 |
cctaaggtaatgcttttcatgaatcaattttctattct |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54986831 |
cctaaggtaatgcttttcatgaatcaattttctattct |
54986794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University