View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642-Insertion-8 (Length: 248)
Name: NF1642-Insertion-8
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-Insertion-8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 5031130 - 5030887
Alignment:
| Q |
22 |
ataatctgtaacaaacggaccctaagacacctaacagtaacaaaatcacttatatgcaaataatctctcatttagaaaatcaca--aaaataaatggcag |
119 |
Q |
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| T |
5031130 |
ataatctgtaacaaacagaccctaagacacctaacagtaacaaaatcacttatatgcaaataatctctcatttagaaaatctcataaaaataaatggcag |
5031031 |
T |
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| Q |
120 |
caaa---------------agcatggcttaaacatgcaatccaaaacaagttttaaatattctaaaagattaattactatgcactaacaatgtaaaactt |
204 |
Q |
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| T |
5031030 |
caaacagagagaaagcaaaagcatggcttatacatgcaatccaaaacaagttttaaatattctaaaagattaattactatgcactaacaatgtaaaactt |
5030931 |
T |
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| Q |
205 |
ttctacacaggcatccaatcctacgaagcatggactcagacacg |
248 |
Q |
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| T |
5030930 |
ttctacacaggcatccaatcctacgaagcatggactcagacacg |
5030887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 7988654 - 7988525
Alignment:
| Q |
118 |
agcaaaagcatggcttaaacat-gcaatccaaaacaagttttaaatattctaaaagattaattactatgcactaacaatgtaaaacttttctacacaggc |
216 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||| ||||| || |
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| T |
7988654 |
agcaaaagcatggcttaaacattgcaaaccaaaacaagttttaaatattctaa--gattaattggtatgcactaacactttaaaacttttccacacatgc |
7988557 |
T |
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| Q |
217 |
atccaatcctacgaagcatggactcagacacg |
248 |
Q |
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| T |
7988556 |
atctgatcctatgaagcatagactcagacacg |
7988525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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