View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1642-Insertion-9 (Length: 230)
Name: NF1642-Insertion-9
Description: NF1642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1642-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 12750659 - 12750881
Alignment:
| Q |
8 |
gaatgtacctatctatcaaacaccacccatgatggacaaagagtgacaatctgttccacaaccaaccgtctcagaggacaacccattacaattttcttgt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12750659 |
gaatgtacctatctatcaaacaccacccatgatggacaaagagtgacaatctgttccacaaccaaccgtctcacaggacaacccattacaattttcttgt |
12750758 |
T |
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| Q |
108 |
gtggcacaacctgcattgcaataataatcacacaaggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtg |
207 |
Q |
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| T |
12750759 |
gtggcacaacctgcattgcaataataatcacacaaggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtg |
12750858 |
T |
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| Q |
208 |
ttaagtttatttaatatgccata |
230 |
Q |
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| T |
12750859 |
ttaagtttatttaatatgccata |
12750881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 12813623 - 12813845
Alignment:
| Q |
8 |
gaatgtacctatctatcaaacaccacccatgatggacaaagagtgacaatctgttccacaaccaaccgtctcagaggacaacccattacaattttcttgt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12813623 |
gaatgtacctatctatcaaacaccacccatgatggacaaagagtgacaatctgttccacaaccaaccgtctcacaggacaacccattacaattttcttgt |
12813722 |
T |
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| Q |
108 |
gtggcacaacctgcattgcaataataatcacacaaggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtg |
207 |
Q |
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| T |
12813723 |
gtggcacaacctgcattgcaataataatcacacaaggaagtttactaatgtgatatgattgtaaatggtaatggtaagtttaaaatgtgatagcaaagtg |
12813822 |
T |
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| Q |
208 |
ttaagtttatttaatatgccata |
230 |
Q |
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| T |
12813823 |
ttaagtttatttaatatgccata |
12813845 |
T |
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Back To:
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