View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16420_low_1 (Length: 544)
Name: NF16420_low_1
Description: NF16420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16420_low_1 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 2 - 521
Target Start/End: Original strand, 12042886 - 12043392
Alignment:
| Q |
2 |
attacattttatccatgattgaataggtgtggctgccataaaacctcaatgattttaggtgctctagaatgatgacagttgacattaaaagctttcaaca |
101 |
Q |
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| T |
12042886 |
attacattttatccatgattgaataggtgtggctgccataaaacctcaatgattttagatgctctagaattatgacagttgacattaaaagctttcaaca |
12042985 |
T |
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| Q |
102 |
atcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacacaagttctggtgttaggt |
201 |
Q |
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| T |
12042986 |
atcaaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacacaagttctggtgttaggt |
12043085 |
T |
|
| Q |
202 |
ttgatattgttgaatctcatattgtttctacaccaccagattgcatttaaaatattaatgactgcataagaaagaactaacttgccttggggactccatc |
301 |
Q |
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| T |
12043086 |
ttgatactgttgaatctcatattgtttctacaccaccagattgcatttaaaatgttaatgactgcataagcaataactaacttgtcttggggactccatc |
12043185 |
T |
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| Q |
302 |
ctcttttgcaaatctcaaagatggataaaattgaagttaggttgagatttaagttgattaagctgctaagccagttccacaaagtcatagagaaagaaca |
401 |
Q |
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| T |
12043186 |
ctcttttgcaaatctc--agatggataacattgaagttaggttgagatttaagttgattaagctgctaagacagttccacaaagtcatggagaaagagcg |
12043283 |
T |
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| Q |
402 |
ttggaggaagagatgctatgaagtttcaggttgcttgttgcacaagctgcacatattgatgggaaagataagcctctgagatgcacgttttcatcagttg |
501 |
Q |
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| T |
12043284 |
ttggaggaagagatgctatgaagtttcaggttgcttgttgcac-----------attgatgggaaagataagcctctgagatgcaggttttcatcggttg |
12043372 |
T |
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| Q |
502 |
gcatcttctcatggatcatt |
521 |
Q |
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| T |
12043373 |
gaatcttctcatggatcatt |
12043392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 2 - 508
Target Start/End: Complemental strand, 30479 - 29976
Alignment:
| Q |
2 |
attacattttatccatgattgaataggtgtggctgccataaaacctcaatgattttaggtgctctagaatgatgacagttgacattaaaagctttcaaca |
101 |
Q |
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| T |
30479 |
attacattttacccaagattgaatagggg--gttgccataaaacttcaatgattttgggagctctagacagatggcatttcacattgaaggctttcagca |
30382 |
T |
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| Q |
102 |
at-caaagtcagcaatgaaatttattgtggtcaaagaggttaagtttcctgagatagaggtgctaacaataatcatattaacacaagttctggtgttagg |
200 |
Q |
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| T |
30381 |
aaacaaaattatgaatggaattgttggtggtcaaagatgttaagtttccagatgtagaggtgctggcaacaatcatgttgacacaagttctaaagttagg |
30282 |
T |
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| Q |
201 |
tttgatattgttgaatctcatattgtttctacaccaccagattgcatttaaaatattaatgactgcataagaaagaactaacttgccttggggactccat |
300 |
Q |
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| T |
30281 |
cttgacatcattgaatctcttattgtttctacaccaccatattacatttagaatgttaatgactgcagcagcaataactaacataccttgctgactccat |
30182 |
T |
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| Q |
301 |
cctcttttgcaaatctcaaagatggataaaattgaagttaggttgagatttaagttgattaagctgctaagccagttccacaaagtcatagagaaagaac |
400 |
Q |
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| T |
30181 |
cctctcttgcaaatctcaaatatggacaacactgaagtgagattgaggtttaagttgattaaactgcaaagccaattccacagagataaagagaaagggc |
30082 |
T |
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| Q |
401 |
attggaggaagagatgctatgaagtttcaggttgcttgttgcacaagctgcacatattgatgggaaagataagcctctgagatgcacgttttcatcagtt |
500 |
Q |
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| T |
30081 |
aattaaggaaaagatgctttgaagtttctggttgtttattgcacaagct--acacattgatgggaaagataaacctctgagctgaagattttcatcagtt |
29984 |
T |
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| Q |
501 |
ggcatctt |
508 |
Q |
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| T |
29983 |
ggcatctt |
29976 |
T |
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