View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16420_low_4 (Length: 277)
Name: NF16420_low_4
Description: NF16420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16420_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 34908737 - 34908979
Alignment:
| Q |
15 |
agtttcctgcggcatctttcgtctggcctatctgatttccttgtcgcggttgtttgagcaatgaagagaacaaatgcaagaagggtagctatgaggatga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34908737 |
agtttcctgcggcatctttcgtctggcctatctgatttccttgtcgcggttgtttgagcaatgaagagaacaaatgcaagaagggtagctatgaggatga |
34908836 |
T |
|
| Q |
115 |
tattgtgcctggccatgttgttttgtggaatgtgagattgtgttataagttctttttgtgatttgatgagtaaaatagagggatagagggtggtatttat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34908837 |
tattgtgcctggccatgttgttttgtggaatgtgagattgtgttctaagttctttttgtgatttgatgagtaaaatagagggatagagggtggtatttat |
34908936 |
T |
|
| Q |
215 |
tgaggatttgaggtgttgcatgttaggtacgtgtaagggaaat |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34908937 |
tgaggatttgaggtgttgcatgttaggtacgtgtaagggaaat |
34908979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 34902527 - 34902749
Alignment:
| Q |
22 |
tgcggcatctttcgtctggcctatctgatttccttgtcgcggttgtttgagcaatgaagagaacaaatgcaagaagggtagctatgaggatgatattgtg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| ||| ||||||| || ||||| |
|
|
| T |
34902527 |
tgcggcatctttcgtctggcctatctgatttccttgtcgcggttgcttgagaaatgaagagaactaatgcaagaagggaagccatgaggagaatgttgtg |
34902626 |
T |
|
| Q |
122 |
cctggccatgttgttttgtggaatgtgaga--ttgtgttataagttctttttgtgatttgatgagtaaaatagagggatagagggtggtatttattgagg |
219 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||| || || ||| ||||||| |||||| |||||||| | ||||||| |||||||||||||||| |||| |
|
|
| T |
34902627 |
cctggcca--ttgttatgtgaaatttgagagtttttgctattgcttctttt--tgattttatgagtaataaagagggaaagagggtggtatttatagagg |
34902722 |
T |
|
| Q |
220 |
atttgaggtgttgcatgttaggtacgt |
246 |
Q |
| |
|
||||| |||| ||| |||||||||||| |
|
|
| T |
34902723 |
atttggggtgatgcttgttaggtacgt |
34902749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 246
Target Start/End: Original strand, 34895011 - 34895233
Alignment:
| Q |
22 |
tgcggcatctttcgtctggcctatctgatttccttgtcgcggttgtttgagcaatgaagagaacaaatgcaagaagggtagctatgaggatgatattgtg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||||| ||| ||||||| || ||||| |
|
|
| T |
34895011 |
tgcggcatctttcgtctggcctatctgatttccttgtcgcggttgcttgagaaatgaagataactaatgcaagaagggaagccatgaggagaatgttgtg |
34895110 |
T |
|
| Q |
122 |
cctggccatgttgttttgtggaatgtgaga--ttgtgttataagttctttttgtgatttgatgagtaaaatagagggatagagggtggtatttattgagg |
219 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||| || || ||| ||||||| |||||| |||||||| | ||||||| |||||||||||||||| |||| |
|
|
| T |
34895111 |
cctggcca--ttgttctgtgaaatttgagagtttttgctattgcttctttt--tgattttatgagtaataaagagggaaagagggtggtatttatagagg |
34895206 |
T |
|
| Q |
220 |
atttgaggtgttgcatgttaggtacgt |
246 |
Q |
| |
|
||||| || | | |||||||||||||| |
|
|
| T |
34895207 |
atttggggagattcatgttaggtacgt |
34895233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University