View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16420_low_6 (Length: 249)
Name: NF16420_low_6
Description: NF16420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16420_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29829565 - 29829322
Alignment:
| Q |
1 |
tcatcatcaccatcaaccatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgcttt |
100 |
Q |
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| T |
29829565 |
tcatcatcaccatcaactatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgcttt |
29829466 |
T |
|
| Q |
101 |
ttatacgaattgattttatctttgaacctgcatacctaacctctgcatggagccattcattttttaaaacattcccatctttgtccagtatagatttgag |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29829465 |
ttatacgaattgatttcatctttgaacctgcatacctaacctctgcatggagccattcattttttaaaacatttccatctttgtccagtatagatttgag |
29829366 |
T |
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| Q |
201 |
actcttgtcatgcaattgcaaatcaaacacatgcctatgatact |
244 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
29829365 |
actcttgtcatgcagttgcaaatcaaacacatgcctatggtact |
29829322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29841907 - 29842140
Alignment:
| Q |
1 |
tcatcatcaccatcaaccatttttctctttt-acaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctt |
99 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29841907 |
tcatcatcaccatcaactatttttctctttttacaaggaaggatcggtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgctt |
29842006 |
T |
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| Q |
100 |
tttatacgaattgattttatctttgaacctgcatacctaacctctgcatggagccattca-ttttttaaaacattcccatctttgtccagtatagatttg |
198 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
29842007 |
tttatacgaattgatttcat------------atacctaacctctgcatggagccattcatttttttaaaacatttccatctttgtccagtatagatttg |
29842094 |
T |
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| Q |
199 |
agactcttgtcatgcaattgcaaatcaaacacatgcctatgatact |
244 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
29842095 |
agactcttgtcatgcagttgcaaatcaaacacatgcctatggtact |
29842140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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