View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16420_low_7 (Length: 211)

Name: NF16420_low_7
Description: NF16420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16420_low_7
NF16420_low_7
[»] chr6 (4 HSPs)
chr6 (1-163)||(31492756-31492918)
chr6 (1-163)||(31498145-31498307)
chr6 (1-163)||(31503532-31503694)
chr6 (1-34)||(17360604-17360637)
[»] chr2 (1 HSPs)
chr2 (1-34)||(29843905-29843938)
[»] chr5 (2 HSPs)
chr5 (1-34)||(4890182-4890215)
chr5 (1-34)||(13978468-13978501)
[»] chr4 (1 HSPs)
chr4 (7-35)||(20540502-20540530)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 31492918 - 31492756
Alignment:
Q  1 ttttcctaaagtgacatacaatttaggacggatgaggtatttttatgaaatacaccttaaatgcaaagaaaagcggatagaagaacatgttagagtgtct 100  Q
    |||||||||| |||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31492918 ttttcctaaaatgacatacaatttaagacggatggggtattttaatcaaatacaccttaaatgcaaagaaaagcggatagaagaacatgttagagtgtct 31492819  T
Q  101 agtctatctgctagcaggtatataatatatattccaaaagtaaaaacaattaagtttcaaaac 163  Q
    | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  31492818 attctatctgctagtaggtatatgatatatattccaaaagtaaaaacaattaagtttcaaaac 31492756  T

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Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 31498307 - 31498145
Alignment:
Q  1 ttttcctaaagtgacatacaatttaggacggatgaggtatttttatgaaatacaccttaaatgcaaagaaaagcggatagaagaacatgttagagtgtct 100  Q
    |||||||||| |||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31498307 ttttcctaaaatgacatacaatttaagacggatggggtattttaatcaaatacaccttaaatgcaaagaaaagcggatagaagaacatgttagagtgtct 31498208  T
Q  101 agtctatctgctagcaggtatataatatatattccaaaagtaaaaacaattaagtttcaaaac 163  Q
    | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  31498207 attctatctgctagtaggtatatgatatatattccaaaagtaaaaacaattaagtttcaaaac 31498145  T

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Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 31503694 - 31503532
Alignment:
Q  1 ttttcctaaagtgacatacaatttaggacggatgaggtatttttatgaaatacaccttaaatgcaaagaaaagcggatagaagaacatgttagagtgtct 100  Q
    |||||||||| |||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31503694 ttttcctaaaatgacatacaatttaagacggatggggtattttaatcaaatacaccttaaatgcaaagaaaagcggatagaagaacatgttagagtgtct 31503595  T
Q  101 agtctatctgctagcaggtatataatatatattccaaaagtaaaaacaattaagtttcaaaac 163  Q
    | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  31503594 attctatctgctagtaggtatatgatatatattccaaaagtaaaaacaattaagtttcaaaac 31503532  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17360637 - 17360604
Alignment:
Q  1 ttttcctaaagtgacatacaatttaggacggatg 34  Q
    |||| |||||||||||||||||||||||||||||    
T  17360637 tttttctaaagtgacatacaatttaggacggatg 17360604  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29843905 - 29843938
Alignment:
Q  1 ttttcctaaagtgacatacaatttaggacggatg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  29843905 ttttcctaaagtgacatacaatttaggacggatg 29843938  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4890182 - 4890215
Alignment:
Q  1 ttttcctaaagtgacatacaatttaggacggatg 34  Q
    |||| |||||||||||||||||||||||||||||    
T  4890182 tttttctaaagtgacatacaatttaggacggatg 4890215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 13978468 - 13978501
Alignment:
Q  1 ttttcctaaagtgacatacaatttaggacggatg 34  Q
    |||| |||||||||||||||||||||||||||||    
T  13978468 tttttctaaagtgacatacaatttaggacggatg 13978501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 20540502 - 20540530
Alignment:
Q  7 taaagtgacatacaatttaggacggatga 35  Q
    |||||||||||||||||||||||||||||    
T  20540502 taaagtgacatacaatttaggacggatga 20540530  T

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