View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16421_high_1 (Length: 563)
Name: NF16421_high_1
Description: NF16421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16421_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 51372434 - 51371886
Alignment:
| Q |
1 |
aacttgggaagtgattttcttcgattataaggcttctaaatttgttacaattgaggatgttttgtcttcggtaaaagaaggaaaagttatcacgaaagga |
100 |
Q |
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| T |
51372434 |
aacttgggaagtgattttcttcgattataaggcttctaaatttgttacaattgaggatgttttgtcttcggtaaaagaaggaaaagttatcacgaaagga |
51372335 |
T |
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| Q |
101 |
agaaactgggtttcgtacgaaggaaagtgtgtttcgaacgaaattcaatttgttgtgaaagaaataagtgacacgaattctgtgtccgttagtttttggg |
200 |
Q |
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| T |
51372334 |
agaaactgggtttcgtacgaaggaaagtgtgtttcgaacgaaatgcaatttgttgtgaaagaaataagtgacacgaattctgtttccgttagtttttggg |
51372235 |
T |
|
| Q |
201 |
atgatacggtgacgtttggtaaaaaagtgggacatgagaatattgttaagattatgggaatgtttaggtgtggtaaaagagggtatttggtttatgagtt |
300 |
Q |
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| T |
51372234 |
atgatacggtgacgtttggtaaaaaagtgagacatgagaatattgttaagattatgggaatgtttaggtgtggtaaaagagggtatttggtttatgagtt |
51372135 |
T |
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| Q |
301 |
tgtagaagggaagagtttaagggaaattatgcatggtttgagttggttaaggagatggaaaattgctttggggattgcaaaagctattaagtttttgcat |
400 |
Q |
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| T |
51372134 |
tgtagaagggaagagtttaagggaaattatgcatggtttgagttggttaaggagatggaaaattgctttggggattgcaaaagctattaattttttgcat |
51372035 |
T |
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| Q |
401 |
tgtgaatgtttatggtttggtttggggagcgaagtgtcgccggagacggttttggtcgacggaaagggtgttcctcgccttaagcttgactctcccggaa |
500 |
Q |
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| T |
51372034 |
tgtgaatgtttgtggtttggtttggggagcgaagtgtcgccggagacggttttggtcgacggaaagggtgttcctcgccttaagcttgactctcccggaa |
51371935 |
T |
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| Q |
501 |
t---agtaacgccggttatgggtgtcaaaggttttgtttcttcagccta |
546 |
Q |
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| T |
51371934 |
tagtagtaacgccggttatgggtgtcaaaggttttgtttcttcagccta |
51371886 |
T |
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