View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16421_low_2 (Length: 385)
Name: NF16421_low_2
Description: NF16421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16421_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 39951295 - 39951646
Alignment:
| Q |
21 |
tgacgatactgagttttggttgcattcatagctgatcctggagggggtatcttctatactgatcgaagaaaccagcaggggggcatgtgctagctcatgc |
120 |
Q |
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| T |
39951295 |
tgacgatactgagttttggttgcagtcatagctgatcctggaggtggtatcttcattactgatcgaagaaaccagcaggggggcatgtgctagctcatgc |
39951394 |
T |
|
| Q |
121 |
ggccaccataaggctaatgttcaggaaggggaaaggtgaacagctcgtttacaaattgtttgatgccccaaacctgccagaggctgaagcaatgtccttt |
220 |
Q |
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| T |
39951395 |
ggccaccataaggctaatgttcaggaaggggaaaggtgaacagcgcgtttacaaattgtttgatgccccaaacctgccagaggctgaagcaatatccttt |
39951494 |
T |
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| Q |
221 |
atcagacttttccccctttaaaataatctattcactgaatgatttggagaattctaaggtatcataattcatgagattgtaaccagttgcatgaagttca |
320 |
Q |
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| T |
39951495 |
atcagac-tttccccccttaaaataatctattcactgaatgatttggagaattctaaggtatcataattcatgagattgtaaccagttgcatgaagttca |
39951593 |
T |
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| Q |
321 |
actaattaagctatttttctaggctactaactgtcctacttctttggtatatt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951594 |
actaattaagctatttttctaggctactaactgtcctacttctttggtatatt |
39951646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 46402673 - 46402907
Alignment:
| Q |
25 |
gatactgagttttggttgcattcatagctgatcctggagggggtatcttctatactgatcgaa-gaaaccagcaggggggcatgtgctagctcatgcggc |
123 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||||||| || ||||||||||||||||||||||||||||||||| || |
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| T |
46402673 |
gatactgagttttggttgcagtcatagctgatccaggaggtggtatgttcattactgatccaaagaaaccagcaggggggcatgtgctagctcatgcagc |
46402772 |
T |
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| Q |
124 |
caccataaggctaatgttcaggaaggggaaaggtgaacagctcgtttacaaattgtttgatgccccaaacctgccagaggctgaagcaatgtcctttatc |
223 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | |||| |||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
46402773 |
caccataaggctgatgttcaggaaggggaaaggtgaacaacgtgtttgcaaagtgtttgacgccccaaacctgccagaggctgaagcaatatcctttatc |
46402872 |
T |
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| Q |
224 |
agacttttccccctttaaaataatctattcactgaa |
259 |
Q |
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||||||||||||| |||||||||| |||||| |||| |
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| T |
46402873 |
agacttttccccc-ttaaaataatttattcattgaa |
46402907 |
T |
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