View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16421_low_3 (Length: 306)
Name: NF16421_low_3
Description: NF16421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16421_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 305
Target Start/End: Complemental strand, 37285384 - 37285072
Alignment:
| Q |
15 |
atatatacttttagattaattgttaaattcagcataggttcatgtc-------------------accggacaagaatgacactact---gataatatga |
92 |
Q |
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| T |
37285384 |
atatatacttttagattaattgttaaattcagcataggttcatgtcttctatgaacggaacggacaccggacaagaatgacactagtagtgataatatga |
37285285 |
T |
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| Q |
93 |
gaaaatgaattaattgaatgtaaatcacatgtgttgtgtcgaacaccgatcgcaccttcaattaaaaatgtcgggctactgagcctgttatgctctagta |
192 |
Q |
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| T |
37285284 |
gaaaatgaattaattgaatgtaaatcacatgtgtcgtgtcgaacaccgatcgcgcctttgattaaaaatgtcgggctactgagcctgttatgctccagta |
37285185 |
T |
|
| Q |
193 |
tgagataagctggtcttgatttgtagttgacattgttgttgtagttgcttattatttatagtccttgatattgtagaattttatgaacaaataggttgat |
292 |
Q |
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| T |
37285184 |
tgagataagctggtcttgatttgtagttgacattgttgttgtagttgcttattatttatagtccttgatattgtagaattttatgaacaaataggttgat |
37285085 |
T |
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| Q |
293 |
gcagctacaattg |
305 |
Q |
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| T |
37285084 |
gcagctacaattg |
37285072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 28322241 - 28322294
Alignment:
| Q |
74 |
gacactactgataatatgagaaaatgaattaattgaatgtaaatcacatgtgttg |
128 |
Q |
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| T |
28322241 |
gacactagtgataatttgagaaaatgaattaattgaatgt-aatcacatgtgttg |
28322294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 35439353 - 35439302
Alignment:
| Q |
74 |
gacactactgataatatgagaaaatgaattaattgaatgtaaatcacatgtgt |
126 |
Q |
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| T |
35439353 |
gacactagtgataatttgataaaatgaattaattgaatg-aaatctcatgtgt |
35439302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 13725307 - 13725359
Alignment:
| Q |
73 |
tgacactactgataatatgagaaaatgaattaattgaatgtaaatcacatgtgt |
126 |
Q |
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| T |
13725307 |
tgacactgatgataatatgagaaaatgaattaattgaatg-aaatcacatgtgt |
13725359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 41330319 - 41330351
Alignment:
| Q |
94 |
aaaatgaattaattgaatgtaaatcacatgtgt |
126 |
Q |
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| T |
41330319 |
aaaatgaattaattgaatgtaattcacatgtgt |
41330351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 34625744 - 34625792
Alignment:
| Q |
84 |
ataatatgagaaaatgaattaattgaatgtaaatcacatgtgttgtgtcg |
133 |
Q |
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| T |
34625744 |
ataatttgagaaaatgaattaattgaatgt-aatcacatatgttatgtcg |
34625792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 32577507 - 32577472
Alignment:
| Q |
90 |
tgagaaaatgaattaattgaatgtaaatcacatgtgt |
126 |
Q |
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| T |
32577507 |
tgagaaaatgaattaattgaatgt-aatcacatgtgt |
32577472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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