View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16421_low_4 (Length: 270)
Name: NF16421_low_4
Description: NF16421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16421_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 26765308 - 26765507
Alignment:
| Q |
51 |
taatggttctgttttgtacatttcatatggaagttatctatccgtttcaagaacacaaatggatgaaattgcatctgcattgcatgatagtggtgttcga |
150 |
Q |
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| T |
26765308 |
taatggttctgttttgtacatttcatatggaagttatctatcggtttcaagaacacaaatggatgatattgcagctgcattgcacgatagtggtgttcgg |
26765407 |
T |
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| Q |
151 |
ttcttgtgggtaacacgagacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagagtattgtcac |
250 |
Q |
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| T |
26765408 |
ttcttgtgggtaacgcgtgacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgccatggtgtgaccaattgacggtattgtcac |
26765507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 53 - 247
Target Start/End: Original strand, 26785412 - 26785606
Alignment:
| Q |
53 |
atggttctgttttgtacatttcatatggaagttatctatccgtttcaagaacacaaatggatgaaattgcatctgcattgcatgatagtggtgttcgatt |
152 |
Q |
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| T |
26785412 |
atggttccgttttgtacatttcatatggcagttatctatcggtttcaagaacacaaatggatgaaattgcagctgcattgcaggatagtggtgttcggtt |
26785511 |
T |
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| Q |
153 |
cttgtgggtaacacgagacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagagtattgt |
247 |
Q |
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| T |
26785512 |
cttgtgggtagcgcgcgacgagactcatagattgaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagggtattgt |
26785606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 31010461 - 31010517
Alignment:
| Q |
186 |
gaaacatatgtgtgggaaaatggggtttgttgtgacatggtgtgaccaattgagagt |
242 |
Q |
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| T |
31010461 |
gaaagatatttgtggggaaaaagggtttgttttgccatggtgtgaccaattgagagt |
31010517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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