View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16422_high_10 (Length: 315)

Name: NF16422_high_10
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16422_high_10
NF16422_high_10
[»] chr8 (4 HSPs)
chr8 (4-187)||(16686147-16686330)
chr8 (185-297)||(16685514-16685626)
chr8 (1-187)||(20863723-20863909)
chr8 (45-187)||(1674336-1674478)
[»] chr6 (39 HSPs)
chr6 (14-187)||(4557204-4557377)
chr6 (14-187)||(4613598-4613771)
chr6 (189-297)||(4557921-4558029)
chr6 (45-182)||(4585746-4585883)
chr6 (14-187)||(4571051-4571224)
chr6 (189-297)||(4586432-4586540)
chr6 (45-186)||(4516431-4516572)
chr6 (14-186)||(4598250-4598422)
chr6 (37-178)||(4592333-4592474)
chr6 (45-187)||(4574418-4574560)
chr6 (189-297)||(4571768-4571876)
chr6 (15-187)||(4579512-4579684)
chr6 (56-154)||(4457715-4457813)
chr6 (38-183)||(4267050-4267195)
chr6 (37-154)||(4480795-4480912)
chr6 (45-186)||(4601899-4602040)
chr6 (35-183)||(4469903-4470051)
chr6 (205-297)||(4612946-4613038)
chr6 (37-188)||(4515000-4515151)
chr6 (45-187)||(4560616-4560758)
chr6 (45-154)||(4490268-4490377)
chr6 (45-187)||(3171851-3171993)
chr6 (45-183)||(4461233-4461371)
chr6 (37-187)||(4617124-4617274)
chr6 (46-183)||(4563822-4563959)
chr6 (16-187)||(4256491-4256663)
chr6 (76-187)||(4260034-4260145)
chr6 (37-183)||(4505959-4506105)
chr6 (45-186)||(4568166-4568307)
chr6 (45-184)||(4626061-4626200)
chr6 (206-280)||(4299066-4299140)
chr6 (189-297)||(4514349-4514457)
chr6 (45-187)||(4622252-4622394)
chr6 (45-142)||(4299671-4299768)
chr6 (189-297)||(4598966-4599074)
chr6 (45-154)||(4504310-4504419)
chr6 (225-297)||(4517153-4517225)
chr6 (206-294)||(4622953-4623041)
chr6 (206-286)||(4259393-4259473)
[»] scaffold0288 (1 HSPs)
scaffold0288 (45-183)||(3603-3741)
[»] chr5 (2 HSPs)
chr5 (37-183)||(24103101-24103247)
chr5 (45-187)||(27999979-28000121)
[»] chr3 (1 HSPs)
chr3 (69-187)||(1281248-1281366)
[»] chr7 (2 HSPs)
chr7 (45-166)||(3086530-3086651)
chr7 (224-280)||(3087251-3087307)
[»] scaffold0477 (1 HSPs)
scaffold0477 (243-297)||(3917-3971)
[»] scaffold0475 (1 HSPs)
scaffold0475 (89-153)||(3598-3662)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 16686330 - 16686147
Alignment:
Q  4 gtcttcgtcggccttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatct 103  Q
    |||||||||  ||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||    
T  16686330 gtcttcgtccaccttcatttgcagttcaattatctttttcctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatct 16686231  T
Q  104 ctcttcacattggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  16686230 ctcttcacattggtgtcaatttccatgccaatctcccattcattgcaaatatatctgcattttgctggctgatcagcaaaaaat 16686147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 185 - 297
Target Start/End: Complemental strand, 16685626 - 16685514
Alignment:
Q  185 aattataaattctaacatcgaatcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccact 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  16685626 aattataaattctaacatcgaatcatttgtatcggtaatccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccact 16685527  T
Q  285 ttagtgtccaaat 297  Q
    |||||||||||||    
T  16685526 ttagtgtccaaat 16685514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 20863909 - 20863723
Alignment:
Q  1 tgtgtcttcgtcggccttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctca 100  Q
    |||||| || || |||||| ||||||  ||| || |||||| | ||||| || |||||||||||||||| |||| |||||| |||| | ||||||||||     
T  20863909 tgtgtcctcctctgccttcttcttcaactcatttgtcttttgcctcatcctccttcctttctctcccaccatcaattcatttaccagcatctccacctcc 20863810  T
Q  101 tctctcttcacattggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    |||||||| ||||||||||||||||| || ||||||| |||||  |||||||| ||| |||||||||  ||||||||||||||||||    
T  20863809 tctctcttgacattggtgtcaatttcgatcccaatctcccatttgttgcaaatgtatctgcagtttgtcggctgatcagcaaaaaat 20863723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 1674336 - 1674478
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||| ||||| ||||||||||| |||| ||||||||  | ||||||||   | |||||||||||||| || ||||||||||| ||||||| ||||||    
T  1674336 tcatcttttttccattctctcccaccatcaattcattgataagcttctccaaaccctctctcttcacattcgtatcaatttccataccaatcttccattc 1674435  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    ||| |||||| || | ||||||| |||||||||||||||||||    
T  1674436 attacaaataaatctacagtttgttggctgatcagcaaaaaat 1674478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 4557204 - 4557377
Alignment:
Q  14 gccttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacat 113  Q
    |||||| ||||||  |||||||||||||||  |||||||||||||||||| ||| | |||| |||||||||||| ||||| |||||||||||||||||||    
T  4557204 gccttcgtcttcatctcaattatctttttccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacat 4557303  T
Q  114 tggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    |||||||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||    
T  4557304 tggtgtcaatttccatgccaatctcccatgtattgcaaatatatctgcagtttgctggctgatcagcaaaaaat 4557377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 187
Target Start/End: Complemental strand, 4613771 - 4613598
Alignment:
Q  14 gccttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacat 113  Q
    |||||| ||||||  ||||||  ||||| | |||| |||||||||||||||||||| |||| ||||||||||| |||||| |||||||||||||||||||    
T  4613771 gccttcttcttcaactcaattgccttttgcctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctcttcacat 4613672  T
Q  114 tggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    |||||||||||||||| ||||| | |||||||||||| |||||| ||||||||||||||||||| || ||||||    
T  4613671 tggtgtcaatttccatcccaatttcccattcattgcatatatatctgcagtttgctggctgatccgcgaaaaat 4613598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 4557921 - 4558029
Alignment:
Q  189 ataaattctaacatcgaatcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttag 288  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4557921 ataaattctaccatcgaatcatttgtatctgtaatccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttag 4558020  T
Q  289 tgtccaaat 297  Q
    |||||||||    
T  4558021 tgtccaaat 4558029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 45 - 182
Target Start/End: Original strand, 4585746 - 4585883
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||    
T  4585746 tcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctcccattc 4585845  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaa 182  Q
    ||||||||||  | | ||||||| ||||||||||||||    
T  4585846 attgcaaataattctacagtttgttggctgatcagcaa 4585883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 4571051 - 4571224
Alignment:
Q  14 gccttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacat 113  Q
    |||||| ||||||  || ||||| |||||| |||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||| |||||||||||    
T  4571051 gccttcttcttcatctccattatatttttcctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacat 4571150  T
Q  114 tggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    | || || ||||| || ||||||| ||||  |||||| |||||| | |||||||||||||||||||||||||||    
T  4571151 tagtatcgatttcgattccaatctcccatgtattgcagatatatctacagtttgctggctgatcagcaaaaaat 4571224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 4586432 - 4586540
Alignment:
Q  189 ataaattctaacatcgaatcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttag 288  Q
    ||||||||||  ||||||||||||| ||| ||||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  4586432 ataaattctatgatcgaatcatttggatcagtaatccttataaagtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtccactttag 4586531  T
Q  289 tgtccaaat 297  Q
    |||||||||    
T  4586532 tgtccaaat 4586540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 4516431 - 4516572
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||||||||| |||||||| || | |||||||| || |||||||||||| ||||||||||||||||| ||||||||    ||||||| ||||||    
T  4516431 tcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattggtatcaatttctgctccaatctcccattc 4516530  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaa 186  Q
    ||||||||||||| |||| |||| |||||| |||||||||||    
T  4516531 attgcaaatatatctgcaatttgttggctgctcagcaaaaaa 4516572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 4598250 - 4598422
Alignment:
Q  14 gccttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacat 113  Q
    |||||||||||||  |||||| |||||| | |||| ||||||||||| ||||||   |||| ||| ||||||| |||||||||||| |||||||||||||    
T  4598250 gccttcatcttcaaatcaattgtcttttgcctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacat 4598349  T
Q  114 tggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaa 186  Q
    | || |||||||  || ||||||| ||||||||||||||||||| ||||||| ||| ||||||| || |||||    
T  4598350 tagtttcaattttgattccaatctcccattcattgcaaatatatctgcagttggcttgctgatccgcgaaaaa 4598422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 4592333 - 4592474
Alignment:
Q  37 ctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatc 136  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||||||  |  ||||||||||| |||||||| ||||| || ||||||||||| ||||||    
T  4592333 ctttttcctcatcttctttcctttctctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaatc 4592432  T
Q  137 taccattcattgcaaatatatatgcagtttgctggctgatca 178  Q
    | |||||||||| |||||  | | ||||||| ||||||||||    
T  4592433 tcccattcattgtaaataagtctacagtttgttggctgatca 4592474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 4574418 - 4574560
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||||||||| |||||    |||| |||||||||||  ||||||||||| || ||||| ||||| || || |||||| | ||||||| ||||||    
T  4574418 tcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccattc 4574517  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    ||||||||||||| ||||||||||||||||||| | |||||||    
T  4574518 attgcaaatatatctgcagtttgctggctgatccgaaaaaaat 4574560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 4571768 - 4571876
Alignment:
Q  189 ataaattctaacatcgaatcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttag 288  Q
    |||||||||| |||||||||||||| ||| ||||||  ||||||| ||| || |||| ||||||||||||||| || |||||| ||||||||||||||||    
T  4571768 ataaattctaccatcgaatcatttggatcagtaatctgtataaaggcaggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttag 4571867  T
Q  289 tgtccaaat 297  Q
    |||||||||    
T  4571868 tgtccaaat 4571876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 4579512 - 4579684
Alignment:
Q  15 ccttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacatt 114  Q
    ||||| ||||||  ||||||  ||||| | ||||||||||| ||||||||||||| |||| |||||| |||| |||||||||||| ||||||||||||||    
T  4579512 ccttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacatt 4579611  T
Q  115 ggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
     ||||| ||||| || ||||| | ||||  |||||| | |||| ||||| || |||| |||||||| ||||||    
T  4579612 agtgtcgatttcaattccaattttccatgtattgcataaatatctgcagcttactgggtgatcagcgaaaaat 4579684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 4457715 - 4457813
Alignment:
Q  56 cctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattcattgcaaata 154  Q
    ||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||||| || || |||||||| |||||||  |||||||||||||||    
T  4457715 cctttttctcccaccatcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaata 4457813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 38 - 183
Target Start/End: Complemental strand, 4267195 - 4267050
Alignment:
Q  38 tttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatct 137  Q
    |||| ||||||| | ||||||||||||||||| |||| ||||||||| |||||||| || ||||||||||||||||| || |  ||||| |  |||||||    
T  4267195 ttttgcttcatcatatttcctttctctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacatttgtattgatttcgagtccaatct 4267096  T
Q  138 accattcattgcaaatatatatgcagtttgctggctgatcagcaaa 183  Q
     |||||||| ||||||| || | ||||||| |||||||||| ||||    
T  4267095 cccattcatagcaaataaatctacagtttgttggctgatcaccaaa 4267050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 4480795 - 4480912
Alignment:
Q  37 ctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatc 136  Q
    ||||| ||||||||||||||||||||||||||| | || ||||||||  ||| ||||||| || ||||||||||||||||| || ||||| |  ||||||    
T  4480795 cttttgcttcatcttctttcctttctctcccaccaacaattcattgattaacctctccacatcttctctcttcacattggtatcgatttcgagtccaatc 4480894  T
Q  137 taccattcattgcaaata 154  Q
    | ||||||||||||||||    
T  4480895 tcccattcattgcaaata 4480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 4601899 - 4602040
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||| ||||| |||||  |||||| |||||||| || |||| ||| ||| |||||||||||||| || || |||||||| ||||||| ||||||    
T  4601899 tcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaatctcccattc 4601998  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaa 186  Q
    ||| |||||| || | ||||||| ||||||||| ||||||||    
T  4601999 attacaaataaatctacagtttgttggctgatcggcaaaaaa 4602040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 4469903 - 4470051
Alignment:
Q  35 atctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaa 134  Q
    ||||||| | ||||||||||||| |||||||| || |||| ||||||||| | ||||||||||||||||||||||||||   | || ||||| |  ||||    
T  4469903 atcttttccctcatcttctttccattctctccaaccatcaattcattgactagcttctccacctcatctctcttcacatctttatcgatttcaagtccaa 4470002  T
Q  135 tctaccattcattgcaaatatatatgcagtttgctggctgatcagcaaa 183  Q
    ||| |||||||||||||||| || | || |||||| |||||||| ||||    
T  4470003 tctcccattcattgcaaataaatctacaatttgctagctgatcaccaaa 4470051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 4613038 - 4612946
Alignment:
Q  205 aatcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttagtgtccaaat 297  Q
    ||||||||| ||| |||||||||||| || | |  |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  4613038 aatcatttggatctgtaatccttatatagccgggaagatccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaat 4612946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 4515151 - 4515000
Alignment:
Q  37 ctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatc 136  Q
    ||||||| |||| || ||||||||||||||||| |||| ||||||||| | ||| || ||||| ||||||||||||||  | || ||||| || ||||||    
T  4515151 ctttttcctcattttatttcctttctctcccaccatcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaatc 4515052  T
Q  137 taccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaatt 188  Q
    | |||||||||||||||| || | ||||||| ||| |||||| |||| ||||    
T  4515051 tcccattcattgcaaataaatctacagtttgttggttgatcaccaaagaatt 4515000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 4560616 - 4560758
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||||||||| ||||     |||| |||||||||||  |||||||| || || ||||| ||||| || ||||||||  | ||||||| ||||||    
T  4560616 tcatcttctttcctttatctcaggacatcaattcattgaccagtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatcttccattc 4560715  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    ||||||||||||| | ||||||||||||||||| |||||||||    
T  4560716 attgcaaatatatcttcagtttgctggctgatctgcaaaaaat 4560758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 4490377 - 4490268
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||||||||||||||||||||| |||| |||||||| ||  ||||| ||||| |||||||| |||||||| ||||||| ||| ||||||| ||||||    
T  4490377 tcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctcccattc 4490278  T
Q  145 attgcaaata 154  Q
     | |||||||    
T  4490277 ttcgcaaata 4490268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 3171851 - 3171993
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||||||||||||||||||||| |||| ||| |||| ||  ||||| |||||  ||||||| |||||||| ||||||||||| ||||||| ||||||    
T  3171851 tcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaatcttccattc 3171950  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
     | |||||||  | | | ||| | ||| |||||||||||||||    
T  3171951 ttggcaaataattctactgttaggtggttgatcagcaaaaaat 3171993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 183
Target Start/End: Original strand, 4461233 - 4461371
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||||||  ||||||| || |||| ||| ||||||||||||||||||||||| ||||||||||   | || ||||| |  ||||||| |||||     
T  4461233 tcatcttctttccaatctctccaaccatcaattcgttgaccaacttctccacctcatccctcttcacatctttatcgatttcaagtccaatctcccattt 4461332  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaa 183  Q
     ||||||||| || | |||||||||||||||||| ||||    
T  4461333 gttgcaaataaatctacagtttgctggctgatcaccaaa 4461371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 4617124 - 4617274
Alignment:
Q  37 ctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatc 136  Q
    ||||| |||||| ||||||||||| |||||  |||||| |||||||| || |||  ||| ||| |||||||||||||| || || |||||||| ||||||    
T  4617124 cttttgcttcattttctttcctttatctccggctatcacttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaatc 4617223  T
Q  137 taccattcattgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    | ||||||||| |||||| || | |||| || |||||| || |||||||||    
T  4617224 tcccattcattacaaataaatctacagtctgttggctggtcggcaaaaaat 4617274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 4563822 - 4563959
Alignment:
Q  46 catcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattca 145  Q
    |||||||||||||||||||||    |||| ||||||||| |  ||||||||||| |||||||| ||||| || || |||||||| ||||||| |||||||    
T  4563822 catcttctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatctcccattca 4563921  T
Q  146 ttgcaaatatatatgcagtttgctggctgatcagcaaa 183  Q
    ||| |||||  | | ||||||| |||||||||| ||||    
T  4563922 ttgtaaataagtctacagtttgttggctgatcaccaaa 4563959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 4256663 - 4256491
Alignment:
Q  16 cttcatcttcagttcaattatctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattg 115  Q
    |||| |||||| ||| || | ||||| | |||||||||||||||| ||||||   |||| |||||||| ||  ||||||||||||||||||||||||||     
T  4256663 cttcttcttcaattccatgaccttttgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacatta 4256564  T
Q  116 gtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctgg-ctgatcagcaaaaaat 187  Q
    || |  ||||| || ||||||| ||||||  | |||||| || | ||||||| ||| ||||||||||||||||    
T  4256563 gtattgatttcaattccaatctcccattcgctacaaataaatctacagtttgttggtctgatcagcaaaaaat 4256491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 4260145 - 4260034
Alignment:
Q  76 ttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgctggctga 175  Q
    |||||||| || |||| ||||||||||||| |||||||| || | |||||| || ||||||| |||||| || |||||| || | ||||||| |||||||    
T  4260145 ttcattgatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctga 4260046  T
Q  176 tcagcaaaaaat 187  Q
    ||||||||||||    
T  4260045 tcagcaaaaaat 4260034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 4505959 - 4506105
Alignment:
Q  37 ctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatc 136  Q
    ||||||| ||||||| |||||||||||||| || || | ||||| ||||| |||||| || |  ||||| |||||||| || |||||||| || ||||||    
T  4505959 ctttttcctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctacattttctctattcacattagtatcaatttcgattccaatc 4506058  T
Q  137 taccattcattgcaaatatatatgcagtttgctggctgatcagcaaa 183  Q
    | | |||||||||||||| || | ||||||| ||| |||||| ||||    
T  4506059 tccaattcattgcaaataaatctacagtttgttggttgatcaccaaa 4506105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 4568166 - 4568307
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||| |||||||||| |||||| || | |||||| | || |||||||||||| |||||||||||||| || |||||||| || || |||| | | |     
T  4568166 tcatcttttttcctttctgtcccaccattaattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaactt 4568265  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaa 186  Q
    ||| ||||||||| |||||| || |||||| |||| ||||||    
T  4568266 attacaaatatatctgcagtatgttggctgctcagaaaaaaa 4568307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 4626061 - 4626200
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||||||||| || |||||  | |||| | |||||| ||  ||||| ||| | || ||||||||||| |  || |||||||| ||||||| ||||||    
T  4626061 tcatcttctttccgttatctcctgccatcaatgcattgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaatctcccattc 4626160  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaa 184  Q
    ||||||||||||| | || |||| ||||||||||||||||    
T  4626161 attgcaaatatatctacaatttgttggctgatcagcaaaa 4626200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 4299140 - 4299066
Alignment:
Q  206 atcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtc 280  Q
    |||||||| ||  ||| |||||||||||||||  ||||| |||| ||||||||||||||||||||||||||||||    
T  4299140 atcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtc 4299066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 297
Target Start/End: Complemental strand, 4514457 - 4514349
Alignment:
Q  189 ataaattctaacatcgaatcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttag 288  Q
    ||||||||||||||| ||||||| | ||| ||  ||| |||||| ||||  || |||||||||| ||||||  |||| |||||||| ||||| |||||||    
T  4514457 ataaattctaacatcaaatcattagcatctgttgtccgtataaaatcaggaaggtccttcagtctaaagtttcgcaaacctggaatccagtcaactttag 4514358  T
Q  289 tgtccaaat 297  Q
    |||||||||    
T  4514357 tgtccaaat 4514349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 4622252 - 4622394
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||||||||| ||||||   |||| |||||||| ||  |||  |||||| ||||| |||||||| || |  ||||| || ||||||| ||||      
T  4622252 tcatcttctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctcttttcacattagtattgatttcgattccaatctcccatga 4622351  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    |||||| |||||| | ||||||| |||||||||||| ||||||    
T  4622352 attgcagatatatctacagtttgttggctgatcagcgaaaaat 4622394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 4299768 - 4299671
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccat 142  Q
    ||||||| | ||||||||||||||| |||| |||||||| || ||| |||||||| |||||| ||||||| || || ||||| || ||||||| ||||    
T  4299768 tcatcttatctcctttctctcccaccatcaattcattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattccaatctcccat 4299671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 297
Target Start/End: Original strand, 4598966 - 4599074
Alignment:
Q  189 ataaattctaacatcgaatcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttag 288  Q
    ||||||||||  || |||| ||||| ||| || |||| |||||| ||||  ||||| |||||||||||||| |||| ||| |||||||| || |||||||    
T  4598966 ataaattctactatagaataatttggatctgttatccctataaaatcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctactttag 4599065  T
Q  289 tgtccaaat 297  Q
    | |||||||    
T  4599066 tttccaaat 4599074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 4504419 - 4504310
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||||||||||||||||||||| |||| |||||| |  |  ||||| ||||| |||||||  |||||||  ||||| | ||| ||||||| ||||||    
T  4504419 tcatcttctttcctttctctcccaccatcaattcattaataagtttctctacctcttctctctgtacattggcatcaatcttcatcccaatctcccattc 4504320  T
Q  145 attgcaaata 154  Q
     | |||||||    
T  4504319 ttcgcaaata 4504310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 4517153 - 4517225
Alignment:
Q  225 cttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttagtgtccaaat 297  Q
    ||||||||||||| ||| ||||| |||| ||||||   ||| |||||||| ||||| ||||||||||||||||    
T  4517153 cttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaat 4517225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 4622953 - 4623041
Alignment:
Q  206 atcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccactttagtgtcca 294  Q
    ||||||||  || ||||||||||||||||||| || |||||| |  |||||||||| |||||| |||| |||||| ||||  |||||||    
T  4622953 atcatttggctctgtaatccttataaagtcaggcaaatcctttaaccgaaagttcttcaatccaggaacacagtctacttcggtgtcca 4623041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 286
Target Start/End: Complemental strand, 4259473 - 4259393
Alignment:
Q  206 atcatttgtatcggtaatccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtccacttt 286  Q
    |||||||| ||| ||||||||||||||||| | || || ||| ||  ||||||||| |||||| |||| |||||| |||||    
T  4259473 atcatttggatctgtaatccttataaagtcgggcaaatgctttagctgaaagttcttcaatccaggaacacagtctacttt 4259393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 3741 - 3603
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||||||||||||||||||  ||| ||||||||| | ||||||||||||||||||||||||||   | || ||||| |  ||||||| ||||||    
T  3741 tcatcttctttcctttctctcccaccgtcaattcattgactagcttctccacctcatctctcttcacatccatatcgatttcaagtccaatctcccattc 3642  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaa 183  Q
     ||||||||| || | ||||||| |||||||||| ||||    
T  3641 gttgcaaataaatctacagtttgttggctgatcaccaaa 3603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 24103101 - 24103247
Alignment:
Q  37 ctttttcttcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatc 136  Q
    ||||| ||||||| ||||||| ||||||||||| |||| ||||||||| |||||||| || ||||||||||||||||| || || ||||| |  ||||||    
T  24103101 cttttgcttcatcgtctttccgttctctcccaccatcaattcattgactaacttctcgacgtcatctctcttcacatttgtatcgatttcgagtccaatc 24103200  T
Q  137 taccattcattgcaaatatatatgcagtttgctggctgatcagcaaa 183  Q
    | |||||||| ||||||| || | ||||||| ||| |||||| ||||    
T  24103201 tcccattcatagcaaataaatctacagtttgttggttgatcaccaaa 24103247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 45 - 187
Target Start/End: Complemental strand, 28000121 - 27999979
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    ||||||| ||||| ||||||||||| |||| ||||||||  | ||||||||  || ||| ||||||||||  | ||||||||||| ||||||| ||||||    
T  28000121 tcatcttttttccattctctcccaccatcaattcattgataagcttctccaaatcctctatcttcacattcatatcaatttccataccaatcttccattc 28000022  T
Q  145 attgcaaatatatatgcagtttgctggctgatcagcaaaaaat 187  Q
    ||| |||||| || | ||||||| |||||||||||||||||||    
T  28000021 attacaaataaatctacagtttgttggctgatcagcaaaaaat 27999979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 1281248 - 1281366
Alignment:
Q  69 ctatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattcattgcaaatatatatgcagtttgc 168  Q
    |||||| |||||||| ||||||  ||||||| |||||||||||||| || || |||||||| ||||||| ||||||||| |||||| || | |||| ||     
T  1281248 ctatcaattcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgt 1281347  T
Q  169 tggctgatcagcaaaaaat 187  Q
    |||||||||||||||||||    
T  1281348 tggctgatcagcaaaaaat 1281366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 3086530 - 3086651
Alignment:
Q  45 tcatcttctttcctttctctcccactatcagttcattgaccaacttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattc 144  Q
    |||||||||||||||| |||||||| |||| |||||||| || |||||| ||||| |||||||||||||| || || ||||| || ||||||| ||||      
T  3086530 tcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccatat 3086629  T
Q  145 attgcaaatatatatgcagttt 166  Q
    |||||| |||||| | ||||||    
T  3086630 attgcagatatatctacagttt 3086651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 3087251 - 3087307
Alignment:
Q  224 ccttataaagtcagacagatccttcagtcgaaagttctgcaatcctggaatacagtc 280  Q
    |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3087251 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtc 3087307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 3971 - 3917
Alignment:
Q  243 tccttcagtcgaaagttctgcaatcctggaatacagtccactttagtgtccaaat 297  Q
    |||||||| ||||||||||||||||||||||||| ||| ||| || |||| ||||    
T  3971 tccttcagccgaaagttctgcaatcctggaataccgtctactctattgtctaaat 3917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 3662 - 3598
Alignment:
Q  89 ttctccacctcatctctcttcacattggtgtcaatttccatgccaatctaccattcattgcaaat 153  Q
    ||||||||||| ||||||||||||||||  || |||||  | ||||||| ||||||||| |||||    
T  3662 ttctccacctcctctctcttcacattggaatctatttcacttccaatctcccattcattccaaat 3598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University