View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16422_high_12 (Length: 285)

Name: NF16422_high_12
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16422_high_12
NF16422_high_12
[»] chr1 (1 HSPs)
chr1 (2-266)||(8141822-8142079)
[»] chr5 (2 HSPs)
chr5 (10-176)||(22210106-22210273)
chr5 (39-143)||(5351790-5351895)
[»] chr2 (3 HSPs)
chr2 (10-145)||(9130594-9130730)
chr2 (60-143)||(31037298-31037381)
chr2 (194-233)||(9130812-9130851)
[»] chr4 (1 HSPs)
chr4 (54-143)||(34730207-34730297)
[»] chr7 (1 HSPs)
chr7 (58-143)||(17907155-17907241)
[»] chr3 (4 HSPs)
chr3 (66-143)||(34786053-34786131)
chr3 (39-143)||(20166768-20166873)
chr3 (39-143)||(47652330-47652434)
chr3 (183-229)||(47953982-47954028)
[»] chr6 (1 HSPs)
chr6 (10-148)||(490848-490991)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 2 - 266
Target Start/End: Original strand, 8141822 - 8142079
Alignment:
Q  2 aaaacctatcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgag 101  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8141822 aaaatctatcttggtggaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcattatctgaaaatgag 8141921  T
Q  102 gataatattatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatttagattttttgagttttaagtcact 201  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8141922 gataatattatgttggagaagag---aataattagatcttttatcaccgattaaaacttaaaactaccaattatttagattttttgagttttaagtcact 8142018  T
Q  202 tttaatttctgttaatggctttctgcaataatttatgcatatatcatgctttactagttgtttaa 266  Q
    ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  8142019 tttaatttctgttaatggctttctgcaataatttatgc----atcatgctttactagttgtttaa 8142079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 22210273 - 22210106
Alignment:
Q  10 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-a 108  Q
    |||| |||||||| |||| |||||||||||| |||||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  22210273 tcttagtagaatcggaagtagagtttgaggatattgatttagatgattcaatagaagaagttgaaggatgtgcctcactatctgaaaatgaggataatga 22210174  T
Q  109 ttatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatt 176  Q
    ||||||||| |||||||||||||| || ||||||||||||   |||||||||| ||||||||||||||    
T  22210173 ttatgttggggaagaggagaataactatatcttttatcactagttagaacttagaactaccaattatt 22210106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 5351790 - 5351895
Alignment:
Q  39 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 137  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| |||||||||||||||| ||    
T  5351790 gacattgattctgaggattcagttgaagaagttgaaggatatgcctcactatgtggaaatggggataatgattatgttggggaagaggagaataattgga 5351889  T
Q  138 tctttt 143  Q
    ||||||    
T  5351890 tctttt 5351895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 9130594 - 9130730
Alignment:
Q  10 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-ta 108  Q
    |||||||||||||||||||||||||| |||| |||||||| ||  ||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||    
T  9130594 tcttggtagaatcagaagcagagtttaaggaaattgattcagacaattcaattgaagaagttgacggaaatgcctcactatctgaaaatgaggacaatta 9130693  T
Q  109 ttatgttggagaagaggagaataattagatcttttat 145  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9130694 ttatgttggggaagaggagaataattagatcttttat 9130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 31037381 - 31037298
Alignment:
Q  60 attgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 143  Q
    |||||| ||||||||||||||||||||| |||| |  ||| ||||||| |||||| ||| ||||| |||||||| ||||||||||    
T  31037381 attgaaaaagttgaaggatatgcctcacgatct-agtatgtggataatgattatgctggggaagaagagaataaatagatctttt 31037298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 9130812 - 9130851
Alignment:
Q  194 aagtcacttttaatttctgttaatggctttctgcaataat 233  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  9130812 aagtcacttttaatttctgcttatggctttctgcaataat 9130851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 34730297 - 34730207
Alignment:
Q  54 gattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 143  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||    
T  34730297 gattccatttaaaaagttgaaggatatgcctcactatctgaaaatgaggataatgatgatgttagggaagaggagaataattagatctttt 34730207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 17907241 - 17907155
Alignment:
Q  58 caattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattagatctttt 143  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| | |||||||||| ||||||||||||||    
T  17907241 caatttaagaagttgaacgatatgcctcactatctgaaaatgaagataattattatgtttgggaagaggagagtaattagatctttt 17907155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 34786131 - 34786053
Alignment:
Q  66 gaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 143  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  34786131 gaagttgaaggagatgcctaactaactgaaaatgaggataatgattatgttggggaagaggagaataattagatctttt 34786053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 20166768 - 20166873
Alignment:
Q  39 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 137  Q
    ||||||||||| || ||||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||| |  || |||| ||||||||||    
T  20166768 gacattgattctgaggattctatttaagaagttgaaggatatgcctcactatcgcaaaatgaggataatgattatgttaggaaataggaaaataattaga 20166867  T
Q  138 tctttt 143  Q
    ||||||    
T  20166868 tctttt 20166873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 143
Target Start/End: Complemental strand, 47652434 - 47652330
Alignment:
Q  39 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattaga 137  Q
    |||||||||| | | |||||| || ||||||||||||||||||||||||||||| ||||||| |||||  |||||||||  ||||||||||||| |||||    
T  47652434 gacattgattacaaggattcattt-aagaagttgaaggatatgcctcactatctaaaaatgaagataacgattatgttgtggaagaggagaatagttaga 47652336  T
Q  138 tctttt 143  Q
    ||||||    
T  47652335 tctttt 47652330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 47954028 - 47953982
Alignment:
Q  183 ttttgagttttaagtcacttttaatttctgttaatggctttctgcaa 229  Q
    ||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  47954028 ttttgagttttaagtcatttttaatttatgtttctggctttctgcaa 47953982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 490991 - 490848
Alignment:
Q  10 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaa---aatgaggataa 106  Q
    |||||||| ||||| |||||||||| ||||| |||||||| | ||||||||||||| |||||||  ||||||| |||  | |||||   || ||||||||    
T  490991 tcttggtataatcaaaagcagagttagaggatattgattcaggtgattcaattgaaaaagttgacagatatgcttcaaaacctgaaaacaacgaggataa 490892  T
Q  107 t-attatgtt-ggagaagaggagaataattagatcttttatcac 148  Q
    | |||||||| || ||||||||| ||||||||||||||||||||    
T  490891 tgattatgttgggggaagaggagcataattagatcttttatcac 490848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University