View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16422_high_8 (Length: 354)
Name: NF16422_high_8
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 42615389 - 42615067
Alignment:
| Q |
13 |
aatatatataatcaaccttaatcaacctcaatttcttcatcatggagttttcaaatggagataatagcaatggtagtaacggttcttccatgaatctttg |
112 |
Q |
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| T |
42615389 |
aatatatataattaaccttaatcaacctcaatttcttcatcatggagttttcaaatggagataatagcaatggtagtaacggttcttccatgaatcttcg |
42615290 |
T |
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| Q |
113 |
caatggtggaacaaaaactagtaacaacaatgaccctttgaattggggtatagctgcagattctatgaagggtagtcacctagatgaggtgaagcgtatg |
212 |
Q |
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| T |
42615289 |
caatggtggaacaaaaactagtaacaacaatgaccctttgaattggggtatagctgcagattctatgaagggtagtcacctagatgaggtgaagcgtatg |
42615190 |
T |
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| Q |
213 |
gtagaggaataccggaaaccggttgtgcccttaggtggaaaaggtttaacaatagcacaagtggctgcggttgcaacttatagtaccgatgtggcggttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42615189 |
gtagaggaataccggaaaccggttgtgcccttaggtggaaaaggtttaacaatagcacaagtggctgcggttgcaacttatagtaccggtgtggcggttg |
42615090 |
T |
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| Q |
313 |
aactagcggaagaggcacgctcc |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
42615089 |
aactagcggaagaggcacgctcc |
42615067 |
T |
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