View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16422_low_1 (Length: 834)
Name: NF16422_low_1
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 80 - 639
Target Start/End: Complemental strand, 41744501 - 41743943
Alignment:
| Q |
80 |
attagcttctaattcaatcacattatattagctaacaaggtaagatattacttatcaatcttgggcatattctttttgtttgtagtgtgttaaatgatta |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41744501 |
attagcttctaattcaatcacattatattagctaacaaggtaagatattacttatcaatcttgggcatattctttttgtttgtagtgtgtcaaatgatta |
41744402 |
T |
|
| Q |
180 |
aactatcaagatgtttccggtgcagtttagatcgattttcaaaagaaaaacaaagtcatatgataactaaaatcgatatgactacatcattttgattcat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41744401 |
aactatcaagatgtttccggtgcagtttagatcgattttcagaagaaaaacaaagtcatatgataactaaaatcgatatgactacatcattttgatccat |
41744302 |
T |
|
| Q |
280 |
atttaataacattactatctcatttaaatccatattatgtgactatgcacaagaagtaaacatgaattgataagccataagaatagtnnnnnnnnngatt |
379 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41744301 |
atttaataacatgactatctcatttaaatccatattatgtgactatgcacaagaagtaaacatgaattgataagccataagaatagt-aaaaaaaagatt |
41744203 |
T |
|
| Q |
380 |
atattataaagtattaaacctattgatgttaaggctaggctattggatgcaaggttagaattttggttgtccttttaaacctattgatgttggtcataat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41744202 |
atattataaagtattaaacctattgatgttaaggctaggctattggatgcaaggttagaattttggttgtccttttaaacctattgatgttggtcataat |
41744103 |
T |
|
| Q |
480 |
attgaagttgtttgtttgtggaagaaaaatcaaaaggagatatgattaatttcatgttgtcctctgtcgtcaaatgttattaatttttaactggaatgtt |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
41744102 |
attgaagttgtttgtttgtggaagaaaaatcaaaaggagatatgattaatttcatgttgtcctctgtcgtcaaatattattaacttttaactggaatgtt |
41744003 |
T |
|
| Q |
580 |
tatggatgtgtaagggatgactctcggtcataacaagtatttcgtatcttttatagaggc |
639 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
41744002 |
tatggatgtgcaagggatgaatctcggtcataataagtatttcgtgtcttttatagaggc |
41743943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 701 - 817
Target Start/End: Complemental strand, 41743879 - 41743750
Alignment:
| Q |
701 |
ataagttgttcttggaggattagacaagtttttaatgatttcatcttcttgattaacct-------------gctttattttgtttatttggtttagcac |
787 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41743879 |
ataagttgttcttggaggattaggcaagtttttaatgatttcatcttcttgattaaccttatattttgtgtagctttattttgtttatttggtttagcac |
41743780 |
T |
|
| Q |
788 |
aatgcggatttttgatgaaaaggcaagatg |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41743779 |
aatgcggatttttgatgaaaaggcaagatg |
41743750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 41746833 - 41746759
Alignment:
| Q |
10 |
tcgaagaatatactgttataaagtaaataaattaatcagttgatttgatattttgacatccttcgtcttgattag |
84 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41746833 |
tcgaataaaatactgttataaagtaaataaattaatcagttgatttgatattttgacatccttcgtcttgattag |
41746759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University