View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16422_low_10 (Length: 392)
Name: NF16422_low_10
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 187 - 376
Target Start/End: Original strand, 31888407 - 31888596
Alignment:
| Q |
187 |
aatgacatgagttattcttgccttcctctccctaattggttaaaatcattgattggtaatttaatttcaaaaatcaaaattcccttcttaatttcaaatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31888407 |
aatgacatgagttattcttgccttcctctccctaattggttaaaatcattgattggtaatttaatttcaaaaatcaaaattccctttttaatttcaaatg |
31888506 |
T |
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| Q |
287 |
aaattagtttgtgtgttggaattggatgggaatactacaagatacaacaagaagaaatgcattgttcaaacttcaaagaggagctttttg |
376 |
Q |
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| T |
31888507 |
aaattagtttgtgtgttggaattggatgggaatactacaagatacaacaagaagaaatgcattgttcaaacttcaaagaggagctttttg |
31888596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 31888254 - 31888301
Alignment:
| Q |
38 |
ctttcagatctatgtctccggcggccatgaggtggagggctggtcggg |
85 |
Q |
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| T |
31888254 |
ctttcaaatctatgtctccggcggccatgaggtggagggctggtcggg |
31888301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 187 - 376
Target Start/End: Complemental strand, 16248921 - 16248732
Alignment:
| Q |
187 |
aatgacatgagttattcttgccttcctctccctaattggttaaaatcattgattggtaatttaatttcaaaaatcaaaattcccttcttaatttcaaatg |
286 |
Q |
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| T |
16248921 |
aatgacatgagttattcttgccttcctctccctaattggttaaaatcattgattggtaatttaatttcaaaaatcaaaattccctttttaatttcaaatg |
16248822 |
T |
|
| Q |
287 |
aaattagtttgtgtgttggaattggatgggaatactacaagatacaacaagaagaaatgcattgttcaaacttcaaagaggagctttttg |
376 |
Q |
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| T |
16248821 |
aaattagtttgtgtgttggaattggatgggaatactacaagatacaacaagaagaaatgcattgttcaaacttcaaagaggagctttttg |
16248732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 344
Target Start/End: Complemental strand, 9809909 - 9809815
Alignment:
| Q |
250 |
atttcaaaaatcaaaattcccttcttaatttcaaatgaaattagtttgtgtgttggaattggatgggaatactacaagatacaacaagaagaaat |
344 |
Q |
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||||||| |||||||||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
9809909 |
atttcaacaatcaaaattccatctttaattccaaatgaaattagtttgtgtgttgaaattggatgggaatactacaagatacaacaagaaaaaat |
9809815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 16249072 - 16249024
Alignment:
| Q |
37 |
cctttcagatctatgtctccggcggccatgaggtggagggctggtcggg |
85 |
Q |
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| T |
16249072 |
cctttcagatctatgtctccggcggccatgaggtggagggctggtcggg |
16249024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 9809956 - 9809907
Alignment:
| Q |
187 |
aatgacatgagttattcttgccttcctctccctaattggttaaaatcatt |
236 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
9809956 |
aatgacatggattattcttgccttactctccctaattggttaaaatcatt |
9809907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 187 - 344
Target Start/End: Original strand, 39939656 - 39939813
Alignment:
| Q |
187 |
aatgacatgagttattcttgccttcctctccctaattggttaaaatcattgattggtaatttaatttcaaaaatcaaaattcccttcttaatttcaaatg |
286 |
Q |
| |
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||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||| | |||||| |||||| |
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| T |
39939656 |
aatgacatggattattcttgcctgactctccctaatttgttaaaatcattgattgacaatttcatttcaacaatcaaaattccatctttaattccaaatg |
39939755 |
T |
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| Q |
287 |
aaattagtttgtgtgttggaattggatgggaatactacaagatacaacaagaagaaat |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39939756 |
aaattagtttgtgtgttggaattggatgggaatactacaagatacaacaagaagaaat |
39939813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 29347595 - 29347733
Alignment:
| Q |
197 |
gttattcttgccttcctctccctaattggttaaaatcattgattggtaatttaatttcaaaaatcaaaattcccttcttaatttcaaatgaaattagttt |
296 |
Q |
| |
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||||||||| |||| |||||||||||| ||| ||| | ||||||||||||| | |||||| |||||| ||| |||| ||||| |||||| ||| |
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| T |
29347595 |
gttattctttccttactctccctaattcgttgaaacccctgattggtaatttcaattcaaatatcaaa-------tctcaattccaaattaaattaattt |
29347687 |
T |
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| Q |
297 |
gtgtgttggaattggatgggaatactacaagatacaacaagaagaa |
342 |
Q |
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|| | ||||| ||||||| | |||||||||||||||||||||||| |
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| T |
29347688 |
gttttatggaaatggatggaagtactacaagatacaacaagaagaa |
29347733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Original strand, 7934479 - 7934526
Alignment:
| Q |
38 |
ctttcagatctatgtctccggcggccatgaggtggagggctggtcggg |
85 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
7934479 |
ctttcagatctatgtctctggcggccatgaggtggagggatggtcggg |
7934526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 34579205 - 34579158
Alignment:
| Q |
38 |
ctttcagatctatgtctccggcggccatgaggtggagggctggtcggg |
85 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
34579205 |
ctttcagatctatgtctctggcggccatgaggtggagggatggtcggg |
34579158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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