View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16422_low_11 (Length: 377)
Name: NF16422_low_11
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_11 |
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| [»] scaffold0026 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 25845657 - 25845440
Alignment:
| Q |
21 |
gtagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagcaaaacaccaagctcaagcctcatgc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
25845657 |
gtagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagaaaaacaccaagctcaagccacatgc |
25845558 |
T |
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| Q |
121 |
catgtctgtctttctcatggtaagttacta-----ttagcaaacaaaatttcgtaaaagaaaacttgaaatccgtctctaattctataactttattttgg |
215 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||||| ||||||| ||||||| |
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| T |
25845557 |
catgtctgtctttctcatggtaagttactagaaacttagcaaaggaaatttagtaaaagaaaacatgaaatccgtctctaattatataactatattttga |
25845458 |
T |
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| Q |
216 |
accgagtacattagagac |
233 |
Q |
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|| || |||||||||||| |
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| T |
25845457 |
actgaatacattagagac |
25845440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 272 - 362
Target Start/End: Complemental strand, 25845405 - 25845314
Alignment:
| Q |
272 |
gtgtcatttcacatc-gttacagttcaagctttgactttgtcaattgtcaccattcaccatttaaatatataagaaaaaaccagctaattat |
362 |
Q |
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|||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25845405 |
gtgtcatttcgcatccgttaccattcaagctttgactttgtcaattgtcaccattcaccatttaaatatataagaaaaaaccagctaattat |
25845314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 25847882 - 25847768
Alignment:
| Q |
30 |
ttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagcaaaacaccaagctcaagcctcatgccatgtctgt |
129 |
Q |
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| T |
25847882 |
ttgagattgctccaccagctaagcaattgttctcattcttaaaagattcaaatgttccattggagcacaatcctaagctcaagcctcatgccatgtctgt |
25847783 |
T |
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| Q |
130 |
ctttctcatggtaag |
144 |
Q |
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|||||| |||||||| |
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| T |
25847782 |
ctttcttatggtaag |
25847768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 25849867 - 25849745
Alignment:
| Q |
22 |
tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagcaaaacaccaagctcaagcctcatgcc |
121 |
Q |
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||||||| | |||||||||||| ||||| | || |||| |||||||| ||||||||||| ||||||||||||||||| | ||||| ||||||||||| |
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| T |
25849867 |
tagaatactggagattgctccaccagctaagcaaatgttttcattcttaaaagattcaaatgttcctttggagcaaaatcctaagcttaagcctcatgct |
25849768 |
T |
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| Q |
122 |
atgtctgtctttctcatggtaag |
144 |
Q |
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|||||||| |||||||||||||| |
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| T |
25849767 |
atgtctgtttttctcatggtaag |
25849745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 102397 - 102518
Alignment:
| Q |
22 |
tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagcaaaacaccaagctcaagcctcatgcc |
121 |
Q |
| |
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|||||| ||||||||||||||| ||||| | |||| ||||||||||| | ||||||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
102397 |
tagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagcctcatgcc |
102496 |
T |
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| Q |
122 |
atgtctgtctttctcatggtaa |
143 |
Q |
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|||||||||||||||||||||| |
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| T |
102497 |
atgtctgtctttctcatggtaa |
102518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 100320 - 100442
Alignment:
| Q |
22 |
tagaatatttgagattgctccatcagctcaaaaactgttctcattcttgaaagattcaaaagttcctttggagcaaaacaccaagctcaagcctcatgcc |
121 |
Q |
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||||||| | |||||||||||| ||||| || || |||| |||||||| ||||||||||| || |||||||| || || | ||||||||||| ||||| |
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| T |
100320 |
tagaatactggagattgctccaccagctaaacaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagccacatgct |
100419 |
T |
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| Q |
122 |
atgtctgtctttctcatggtaag |
144 |
Q |
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||||||||||||||||||||||| |
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| T |
100420 |
atgtctgtctttctcatggtaag |
100442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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