View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16422_low_18 (Length: 264)
Name: NF16422_low_18
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 43406760 - 43406512
Alignment:
| Q |
1 |
acaattctaaaaattatttatatccctaagagtcacattattgtaacattttaaaaacaaaatagatgaacacaaaaattactaaattgataggtcatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43406760 |
acaattctaaaaattatttatatccctaagagtcacattattgtaacattttaaaaa--aaatagatgaacacaaaaattactaaattgataggtcatct |
43406663 |
T |
|
| Q |
101 |
tgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacgatggaagcaagacaagttgaagatgaaattattaatggttagtgaaaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43406662 |
tgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaatgatggaagcaagacaagttgaagatgaaattattaatggttagtgaaaa |
43406563 |
T |
|
| Q |
201 |
gatgaggaacaaattggaagatgacagtatgaagaaaaggaagaaaaaatt |
251 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
43406562 |
gatgaggaacaaattggaagatgtcagtatgaagaaaaggaagaaaaaatt |
43406512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 37005181 - 37005430
Alignment:
| Q |
1 |
acaattctaaaaattatttatatccctaagagtcacattattgtaacattttaaaaacaaaa-tagatgaacacaaaaattactaaattgataggtcatc |
99 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||| |
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| T |
37005181 |
acaattctaaaaattatttatatccctaagtgtcacattattgtaacatttaaaaaaaaaaaatagatgaacacaaa--ttactaaattgataggtcatc |
37005278 |
T |
|
| Q |
100 |
ttgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacgatggaagcaagacaagttgaagatgaaattattaatggttagtgaaa |
199 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37005279 |
ttgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaatgatggaaacaagacaagttgaagatgaaattattaatggttagtgaaa |
37005378 |
T |
|
| Q |
200 |
agatgaggaacaaattggaagatgacagtatgaagaaaaggaagaaaaaatt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37005379 |
agatgaggaacaaattggaagatgacagtatgaagaaaaggaagaaaaaatt |
37005430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 49128886 - 49128638
Alignment:
| Q |
1 |
acaattctaaaaattatttatatccctaagagtcacattattgtaacattttaaaaacaaaatagatgaacacaaaaattactaaattgataggtcatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49128886 |
acaattctaaaaattatttatatccctaagagtcacattattgtaacatttaaaaaa--aaatagatgaaaacaaaaattactaaattgataggtcatct |
49128789 |
T |
|
| Q |
101 |
tgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacgatggaagcaagacaagttgaagatgaaattattaatggttagtgaaaa |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49128788 |
tgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaatgatggaagcaagacaagttgaagatgaaattattaatggttagtgaaaa |
49128689 |
T |
|
| Q |
201 |
gatgaggaacaaattggaagatgacagtatgaagaaaaggaagaaaaaatt |
251 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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|
| T |
49128688 |
gatgaggaacaaattggaagatgacaatatgtagaaaaggaagaaaaaatt |
49128638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 54 - 250
Target Start/End: Complemental strand, 34885239 - 34885043
Alignment:
| Q |
54 |
aaaacaaaatagatgaacacaaaaattactaaattgataggtcatcttgaagnnnnnnnctattgcaaggaagtaaaaataaataattatgaattaacga |
153 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
34885239 |
aaaaaaaaaaagatgaacacaaaaattactaaattgataggtcatcttgaagaaaaaaactattgcaaggaagtaaaaataaataattatgaattaaaga |
34885140 |
T |
|
| Q |
154 |
tggaagcaagacaagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgacagtatgaagaaaaggaagaaaaaat |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34885139 |
tggaagcaagacaagttgaagatgaaattattaatggttagtgaaaagatgaggaacaaattggaagatgacagtatgaagaaaaggaagaaaaaat |
34885043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 34886172 - 34886129
Alignment:
| Q |
8 |
taaaaattatttatatccctaagagtcacattattgtaacattt |
51 |
Q |
| |
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|||||| |||||||||||| ||||||||| |||||||||||||| |
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| T |
34886172 |
taaaaaatatttatatcccgaagagtcacgttattgtaacattt |
34886129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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