View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16422_low_2 (Length: 811)
Name: NF16422_low_2
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_2 |
 | |
|
| [»] scaffold0329 (1 HSPs) |
| | |
|
| [»] scaffold0347 (1 HSPs) |
| | |
|
| [»] scaffold0161 (1 HSPs) |
| | |
|
| [»] scaffold0018 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 164; Significance: 3e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 15939727 - 15939368
Alignment:
| Q |
15 |
aatatatcattcaccaagtattacagtcaccaaagcaaataatcacaaacatttatcgagtttacaatttggtaatcaaatattcaccaagcatgtattc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
15939727 |
aatatatcattcaccaagtattacagtcaccaag-------atcgccaagtattatcgagtttacaattccccaaaaaaatattcaccaagcacgtattc |
15939635 |
T |
|
| Q |
115 |
ctcaatacatattcatcaaacacatagcaagtataacacatgtcaaattatgcaatgagcctatatagacatgactactatatgcatgtggtatcaatcg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||| |||| |||| |||||||||||||||| |||||| |
|
|
| T |
15939634 |
atcaatacatattcatcaaacacatagcaagtatgacacatgttaaattttgcaatgcgccta----gacacgactcctatatgcatgtggtaccaatcg |
15939539 |
T |
|
| Q |
215 |
tcatcaaggtcttcagctcatgatgaaccaaaaacattatagtcaacgaatataatcaacgtctatatggatacaagttttcggtcaacgacaatatgga |
314 |
Q |
| |
|
||| ||||||| || ||||||||| | ||||||||| |||||||||| ||||||||||| |||||||||||||||| | |||||||| |||||| || |
|
|
| T |
15939538 |
tcaccaaggtcgccacctcatgatgcaacaaaaacatcatagtcaacggctataatcaacgactatatggatacaagtatccggtcaacatcaatatcga |
15939439 |
T |
|
| Q |
315 |
tataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttcacaacgat |
385 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||| ||||| |
|
|
| T |
15939438 |
tataaacatccgactcgacatatgatgcatgaacatatgactcaatcaaccatacatatgttcacgacgat |
15939368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 121 - 378
Target Start/End: Original strand, 18076483 - 18076736
Alignment:
| Q |
121 |
acatattcatcaaacacatagcaagtataacacatgtcaaattatgcaatgagcctatatagacatgactactatatgcatgtggtatcaatcgtcatca |
220 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||||||||||| || || ||| |||| |||||||||||||||| ||| ||||| || |
|
|
| T |
18076483 |
acatattcatcaaacacatagaaggtatgacacatgtcaaattatgcaatgtgcgta----gacgcgactcctatatgcatgtggtaccaaccgtcacca |
18076578 |
T |
|
| Q |
221 |
aggtcttcagctcatgatgaaccaaaaacattatagtcaacgaatataatcaacgtctatatggatacaagttttcggtcaacgacaatatggatataaa |
320 |
Q |
| |
|
||||| ||| ||||||||| | ||||||||| ||||||| |||||| | | |||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
18076579 |
aggtcgtcacctcatgatgcaacaaaaacatcatagtcagtagttataattgatggctatatggatacaagtatccggtcaacgacaatatggatataaa |
18076678 |
T |
|
| Q |
321 |
catccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttca |
378 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||| |||||||| ||||||| |||| |
|
|
| T |
18076679 |
catccaactcgacatatgatgcatgaacatatgacttaatcaaccatgcatatcttca |
18076736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 265 - 375
Target Start/End: Complemental strand, 18365626 - 18365516
Alignment:
| Q |
265 |
tataatcaacgtctatatggatacaagttttcggtcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaac |
364 |
Q |
| |
|
||||||||||| ||||||||||||| || | ||||||||| |||||||||| |||||||| ||| | |||||||||| ||||||||| |||||||||||| |
|
|
| T |
18365626 |
tataatcaacggctatatggatacatgtatccggtcaacggcaatatggatgtaaacatctgacacgacatatgatgaatgaacatatgactcaatcaac |
18365527 |
T |
|
| Q |
365 |
cttgcatatgt |
375 |
Q |
| |
|
| ||||||||| |
|
|
| T |
18365526 |
catgcatatgt |
18365516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 308 - 382
Target Start/End: Original strand, 19381950 - 19382024
Alignment:
| Q |
308 |
atatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttcacaac |
382 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
19381950 |
atatggatgtaaacatccgacacgacatatgatgcatgaacatatgactcaatcaaccatgcatatgttcgcaac |
19382024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 382
Target Start/End: Original strand, 15306070 - 15306136
Alignment:
| Q |
316 |
ataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttcacaac |
382 |
Q |
| |
|
|||||||||| || |||||||||||| ||| ||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
15306070 |
ataaacatccaacacaacatatgatgaatggacatatgactcaaacaaccatgcatatgttcacaac |
15306136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 220 - 385
Target Start/End: Complemental strand, 13047002 - 13046838
Alignment:
| Q |
220 |
aaggtcttcagctcatgatgaaccaaaaacattatagtcaacgaatataatcaacgtctatatggatacaagttttcggtcaacgacaatatggatataa |
319 |
Q |
| |
|
|||||| ||| ||||||||| | ||||||||| |||||||||| |||||||||||| |||||||||||||||| | ||||||||| | ||||||||| || |
|
|
| T |
13047002 |
aaggtcatcacctcatgatgcaacaaaaacatcatagtcaacggatataatcaacggctatatggatacaagtatccggtcaacggctatatggatacaa |
13046903 |
T |
|
| Q |
320 |
acatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttcacaacgat |
385 |
Q |
| |
|
||| ||| | |||||||||||||||||||| ||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
13046902 |
gtatctgacacgacatatgatgcatgaacatatgactcaatc-accatgcatatgttcacgacgat |
13046838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 268 - 379
Target Start/End: Complemental strand, 20596751 - 20596639
Alignment:
| Q |
268 |
aatcaacgtctatatggatacaa-gttttcggtcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaacct |
366 |
Q |
| |
|
|||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
20596751 |
aatcaacggctatatgaatacaaagtattcggtcaacgacaatatggatataaacatccgacacgacatatgatgcatggacatatgactcaatcaacca |
20596652 |
T |
|
| Q |
367 |
tgcatatgttcac |
379 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20596651 |
tgcatatgttcac |
20596639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 277 - 382
Target Start/End: Complemental strand, 16226570 - 16226466
Alignment:
| Q |
277 |
ctatatggatacaagttttcggtcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgtt |
376 |
Q |
| |
|
|||||||||||||||| | | ||||||| ||||||||| |||| |||| ||| ||||||||||||||| |||||| ||||||||| ||| |||||||||| |
|
|
| T |
16226570 |
ctatatggatacaagtatccagtcaacggcaatatggacataa-catctgacacaacatatgatgcataaacatatgactcaatccaccatgcatatgtt |
16226472 |
T |
|
| Q |
377 |
cacaac |
382 |
Q |
| |
|
|||||| |
|
|
| T |
16226471 |
cacaac |
16226466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 180 - 382
Target Start/End: Complemental strand, 24901205 - 24901004
Alignment:
| Q |
180 |
tagacatgactactatatgcatgtggtatcaatcgtcatcaaggtcttcagctcatgatgaaccaaaaacattatagtcaacgaatataatcaacgtcta |
279 |
Q |
| |
|
|||||| |||| ||| || ||||||||| || || || ||||||| ||| ||||||||| | |||||| || || ||||||| |||||||||| ||| |
|
|
| T |
24901205 |
tagacacgactcctacatccatgtggtaccattcttctccaaggtcgtcacctcatgatgcaacaaaaatatcattgtcaacggctataatcaacagcta |
24901106 |
T |
|
| Q |
280 |
tatggatacaagttttcggtcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttcac |
379 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||| |||| || || | ||||||||||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
24901105 |
tatggatacaagtatttggtcaacgacaatatggatat-aacacccaacacggcatatgatgcatgaacatatgactcaatcgaccatgcatatgttcac |
24901007 |
T |
|
| Q |
380 |
aac |
382 |
Q |
| |
|
||| |
|
|
| T |
24901006 |
aac |
24901004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 11822999 - 11823082
Alignment:
| Q |
299 |
tcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttcacaac |
382 |
Q |
| |
|
|||||| | |||||||| |||||||| ||| |||||||||||| |||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
11822999 |
tcaacggctatatggatgtaaacatctgacacaacatatgatgactgaacatatgactttatcaaccatgcatatgttcacaac |
11823082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 11822925 - 11823015
Alignment:
| Q |
196 |
atgcatgtggtatcaatcgtcatcaaggtcttcagctcatgatgaaccaaaaacattatagtcaacgaatataatcaacgtctatatggat |
286 |
Q |
| |
|
|||||||||||| || || ||| |||||| ||| ||||||||| | ||||||||| || |||||| ||||||||||| |||||||||| |
|
|
| T |
11822925 |
atgcatgtggtaccattcatcaccaaggttgtcatctcatgatgcaacaaaaacatcattgtcaacagctataatcaacggctatatggat |
11823015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 270 - 382
Target Start/End: Original strand, 34876584 - 34876696
Alignment:
| Q |
270 |
tcaacgtctatatggatacaagttttcggtcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgc |
369 |
Q |
| |
|
|||||| ||||||| |||||||| | ||||||| |||||||||||| |||||||| ||| |||||||||| ||||||||| ||||||||||||||| | |
|
|
| T |
34876584 |
tcaacggctatatgcatacaagtatccggtcaaagacaatatggatgtaaacatctgacatgacatatgatgaatgaacatatgactcaatcaacctttc |
34876683 |
T |
|
| Q |
370 |
atatgttcacaac |
382 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34876684 |
atatgttcacaac |
34876696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 140 - 382
Target Start/End: Original strand, 1612 - 1851
Alignment:
| Q |
140 |
agcaagtataacacatgtcaaattatgcaatgagcctatatagacatgactactatatgcatgtggtatcaatcgtcatcaaggtcttcagctcatgatg |
239 |
Q |
| |
|
||||| ||| || |||||||||| |||||||| ||||| |||| ||||| ||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
|
|
| T |
1612 |
agcaattatgactcatgtcaaatcatgcaatgcgccta----gacacgactattatatgcatgtggtaccaatcgtcaccaaggtcgtcacctcatgatg |
1707 |
T |
|
| Q |
240 |
aaccaaaaacattatagtcaacgaatataatcaacgtctata--tggatacaa-gttttcggtcaacgacaatatggatataaacatccgactcaacata |
336 |
Q |
| |
|
| ||||||||| ||| || || ||||||| | | ||| || |||||| || |||| || || ||||||||||||| ||||||||||||||||| |
|
|
| T |
1708 |
taacaaaaacatcataatcgtcgccaataatcatcaccaataattgaatacaaagtattcg-tcgtcgccaatatggatatacacatccgactcaacata |
1806 |
T |
|
| Q |
337 |
tgatgcatgaacatacgactcaatcaaccttgcatatgttcacaac |
382 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||| |||||||| |
|
|
| T |
1807 |
tgatgcatgaacatatgactcaa-caacaatgcatatattcacaac |
1851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0347 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0347
Description:
Target: scaffold0347; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 10684 - 10588
Alignment:
| Q |
285 |
atacaagttttcggtcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgttcacaac |
382 |
Q |
| |
|
|||||||| | ||||||| ||||||||| |||| | |||||||| | |||||||||||||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
10684 |
atacaagtatccggtcaatgacaatatgaatatta-catccgacacgacatatgatgcatgaacatatgactcaatcgaccatgcatatgttcacaac |
10588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 25768 - 25824
Alignment:
| Q |
15 |
aatatatcattcaccaagtattacagtcaccaaagcaaataatcacaaacatttatc |
71 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
25768 |
aatatatcattcaccgagtattacagtcaccaaagtaaataatcagcaacatttatc |
25824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 180 - 380
Target Start/End: Complemental strand, 18225769 - 18225568
Alignment:
| Q |
180 |
tagacatgactactatatgcatgtggtatcaatcgtcatcaaggtcttcagctcatgatgaaccaaaaacattatagtcaacgaatataatcaacgtcta |
279 |
Q |
| |
|
|||||| |||| |||||||||||||||| ||||| ||| ||||||| ||| ||||||||| | | ||||||| |||||| || |||||| |||| | |
|
|
| T |
18225769 |
tagacacgacttctatatgcatgtggtaccaatcatcaccaaggtcgtcacctcatgatgcaaccaaaacatcatagtcgtcggcaataatcgtcgtcaa |
18225670 |
T |
|
| Q |
280 |
ta--tggatacaa-gttttcggtcaacgacaatatggatataaacatccgactcaacatatgatgcatgaacatacgactcaatcaaccttgcatatgtt |
376 |
Q |
| |
|
|| || |||||| || ||| ||| || ||||||| |||| || ||||||||||||| |||||||||||||||| | ||||| |||| |||||||||| |
|
|
| T |
18225669 |
taattgaatacaaagtattca-tcatcgtcaatatgtatatgaatatccgactcaacaaatgatgcatgaacatatggctcaa-caacaatgcatatgtt |
18225572 |
T |
|
| Q |
377 |
caca |
380 |
Q |
| |
|
|||| |
|
|
| T |
18225571 |
caca |
18225568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 53320 - 53380
Alignment:
| Q |
306 |
caatatggatataaacatccgactcaaca--tatg-atgcatgaacatacgactcaatcaa |
363 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
53320 |
caatatggatataaacatctgactcaacatttatgaatgcatgaacatatgactcaatcaa |
53380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 57272 - 57332
Alignment:
| Q |
306 |
caatatggatataaacatccgactcaaca--tatg-atgcatgaacatacgactcaatcaa |
363 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
57272 |
caatatggatataaacatctgactcaacatttatgaatgcatgaacatatgactcaatcaa |
57332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 30822064 - 30822121
Alignment:
| Q |
306 |
caatatggatataaacatccgactcaaca--tatg-atgcatgaacatacgactcaat |
360 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
30822064 |
caatatggatataaatatccgactcaacatttatgaatgcatgaacatatgactcaat |
30822121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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