View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16422_low_3 (Length: 793)

Name: NF16422_low_3
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16422_low_3
NF16422_low_3
[»] chr4 (37 HSPs)
chr4 (18-458)||(47073267-47073706)
chr4 (261-383)||(51204800-51204922)
chr4 (324-371)||(51204902-51204949)
chr4 (408-458)||(25701219-25701269)
chr4 (408-463)||(25184107-25184162)
chr4 (409-458)||(2704511-2704560)
chr4 (584-704)||(22231226-22231346)
chr4 (99-215)||(29954015-29954131)
chr4 (584-680)||(35819070-35819166)
chr4 (408-455)||(47253751-47253798)
chr4 (408-455)||(52516599-52516646)
chr4 (408-458)||(9139246-9139296)
chr4 (408-458)||(32912742-32912792)
chr4 (408-458)||(34361653-34361703)
chr4 (408-458)||(35021197-35021247)
chr4 (408-458)||(55478057-55478107)
chr4 (408-457)||(7703517-7703566)
chr4 (567-704)||(35796895-35797032)
chr4 (402-459)||(37663895-37663952)
chr4 (409-458)||(38812260-38812309)
chr4 (584-705)||(40717358-40717479)
chr4 (409-458)||(49878635-49878683)
chr4 (409-458)||(54995799-54995848)
chr4 (408-456)||(4597994-4598042)
chr4 (564-640)||(21750259-21750335)
chr4 (593-704)||(35788714-35788826)
chr4 (409-460)||(9743585-9743636)
chr4 (408-455)||(20097490-20097537)
chr4 (408-455)||(27396618-27396665)
chr4 (408-455)||(34948259-34948306)
chr4 (409-455)||(2266856-2266902)
chr4 (408-458)||(7152268-7152318)
chr4 (408-457)||(19440810-19440860)
chr4 (408-454)||(32592096-32592142)
chr4 (409-455)||(36493851-36493897)
chr4 (403-457)||(53337570-53337624)
chr4 (408-457)||(39397918-39397967)
[»] chr1 (28 HSPs)
chr1 (18-459)||(26970259-26970699)
chr1 (261-382)||(17695595-17695714)
chr1 (408-462)||(7079205-7079259)
chr1 (567-704)||(16162962-16163099)
chr1 (409-458)||(10182140-10182189)
chr1 (567-704)||(26176937-26177074)
chr1 (408-457)||(47682624-47682673)
chr1 (408-460)||(18422644-18422696)
chr1 (408-455)||(15752027-15752074)
chr1 (408-459)||(30254852-30254903)
chr1 (408-458)||(1547282-1547332)
chr1 (412-458)||(4150490-4150536)
chr1 (408-458)||(19899900-19899950)
chr1 (408-462)||(23999338-23999392)
chr1 (408-458)||(32267029-32267079)
chr1 (408-457)||(3309144-3309193)
chr1 (408-457)||(27227608-27227657)
chr1 (409-454)||(42663785-42663830)
chr1 (408-456)||(10922724-10922772)
chr1 (593-704)||(26229623-26229732)
chr1 (409-457)||(27118330-27118378)
chr1 (410-457)||(42721035-42721082)
chr1 (628-698)||(4112699-4112769)
chr1 (408-458)||(11742481-11742531)
chr1 (409-459)||(13876919-13876969)
chr1 (408-458)||(16415640-16415690)
chr1 (408-458)||(37619027-37619077)
chr1 (412-457)||(47279159-47279204)
[»] chr8 (37 HSPs)
chr8 (557-787)||(9397920-9398152)
chr8 (309-450)||(41190919-41191060)
chr8 (155-261)||(41190811-41190918)
chr8 (458-517)||(9398151-9398210)
chr8 (584-698)||(20301307-20301421)
chr8 (584-698)||(21087939-21088053)
chr8 (18-68)||(41190754-41190804)
chr8 (593-703)||(41790713-41790823)
chr8 (592-704)||(8084181-8084293)
chr8 (409-458)||(4108912-4108961)
chr8 (408-457)||(4133150-4133199)
chr8 (408-459)||(1150247-1150298)
chr8 (660-703)||(7289354-7289397)
chr8 (408-458)||(1204925-1204975)
chr8 (408-458)||(24823414-24823464)
chr8 (408-458)||(43643737-43643787)
chr8 (409-454)||(5018013-5018058)
chr8 (408-457)||(10555344-10555393)
chr8 (408-457)||(15009241-15009290)
chr8 (408-457)||(41362517-41362566)
chr8 (409-457)||(6098661-6098709)
chr8 (584-704)||(11232347-11232467)
chr8 (409-456)||(23176763-23176811)
chr8 (409-457)||(28220955-28221003)
chr8 (408-460)||(30654725-30654777)
chr8 (408-448)||(37970661-37970701)
chr8 (408-455)||(465843-465890)
chr8 (412-455)||(6446709-6446752)
chr8 (408-455)||(7891090-7891137)
chr8 (409-460)||(38110350-38110401)
chr8 (564-618)||(28212874-28212928)
chr8 (409-455)||(35735984-35736030)
chr8 (408-458)||(38643976-38644026)
chr8 (408-457)||(5300088-5300137)
chr8 (639-700)||(8466645-8466706)
chr8 (408-457)||(13307622-13307671)
chr8 (408-441)||(23854573-23854606)
[»] chr2 (35 HSPs)
chr2 (18-240)||(1354383-1354608)
chr2 (18-236)||(1361269-1361490)
chr2 (261-387)||(22963617-22963742)
chr2 (313-387)||(22997786-22997860)
chr2 (628-704)||(16533402-16533478)
chr2 (409-460)||(41643869-41643920)
chr2 (584-704)||(14466328-14466448)
chr2 (584-704)||(16419313-16419433)
chr2 (324-368)||(22997744-22997788)
chr2 (408-459)||(17071891-17071942)
chr2 (408-459)||(19424782-19424833)
chr2 (411-465)||(5881526-5881580)
chr2 (409-459)||(17054251-17054301)
chr2 (327-369)||(22963724-22963766)
chr2 (584-698)||(36352083-36352197)
chr2 (408-461)||(4264231-4264284)
chr2 (409-458)||(19093412-19093461)
chr2 (408-457)||(26357577-26357626)
chr2 (409-458)||(34441921-34441970)
chr2 (408-457)||(41465509-41465558)
chr2 (410-459)||(43446463-43446512)
chr2 (584-704)||(2029815-2029935)
chr2 (409-457)||(18514771-18514819)
chr2 (660-704)||(31001901-31001945)
chr2 (409-457)||(31861895-31861943)
chr2 (628-704)||(34893515-34893591)
chr2 (409-456)||(42005390-42005437)
chr2 (408-458)||(4166921-4166971)
chr2 (408-458)||(18494422-18494472)
chr2 (408-458)||(39167517-39167567)
chr2 (594-704)||(40149154-40149264)
chr2 (408-461)||(11366535-11366588)
chr2 (408-457)||(19313852-19313901)
chr2 (409-458)||(29242293-29242342)
chr2 (408-457)||(33551140-33551189)
[»] chr5 (32 HSPs)
chr5 (261-369)||(10053580-10053687)
chr5 (269-374)||(21266368-21266471)
chr5 (584-704)||(18333617-18333737)
chr5 (409-458)||(5112440-5112489)
chr5 (324-370)||(10053668-10053714)
chr5 (409-458)||(12910349-12910398)
chr5 (409-458)||(35826610-35826659)
chr5 (408-458)||(8742013-8742063)
chr5 (408-458)||(19119858-19119908)
chr5 (408-457)||(15724490-15724539)
chr5 (409-458)||(22616493-22616542)
chr5 (584-704)||(24346654-24346775)
chr5 (408-457)||(26317810-26317859)
chr5 (408-460)||(1429271-1429323)
chr5 (408-460)||(9200230-9200282)
chr5 (584-704)||(9368641-9368761)
chr5 (408-460)||(35933899-35933951)
chr5 (409-461)||(36055874-36055926)
chr5 (408-451)||(5748434-5748477)
chr5 (408-459)||(12164915-12164966)
chr5 (408-459)||(13380493-13380544)
chr5 (584-679)||(15480368-15480463)
chr5 (580-679)||(17352612-17352710)
chr5 (408-457)||(16004502-16004552)
chr5 (593-703)||(17150387-17150497)
chr5 (408-458)||(22974208-22974258)
chr5 (409-459)||(27579037-27579087)
chr5 (408-457)||(7693230-7693279)
chr5 (329-370)||(21266460-21266501)
chr5 (584-704)||(24270023-24270143)
chr5 (408-457)||(40133385-40133434)
chr5 (584-704)||(41666910-41667031)
[»] chr7 (25 HSPs)
chr7 (412-465)||(241024-241077)
chr7 (583-704)||(36277144-36277265)
chr7 (402-458)||(18797303-18797359)
chr7 (584-704)||(31485577-31485697)
chr7 (409-457)||(31520861-31520909)
chr7 (584-704)||(33834237-33834357)
chr7 (583-679)||(36993251-36993347)
chr7 (409-457)||(37346997-37347045)
chr7 (408-458)||(17842723-17842773)
chr7 (408-458)||(32821190-32821240)
chr7 (593-681)||(26239856-26239945)
chr7 (408-457)||(37109847-37109896)
chr7 (408-461)||(43686012-43686065)
chr7 (408-456)||(24211717-24211765)
chr7 (584-704)||(25620182-25620302)
chr7 (584-680)||(28080710-28080806)
chr7 (412-456)||(48928704-48928748)
chr7 (593-704)||(1596648-1596759)
chr7 (568-679)||(21821836-21821947)
chr7 (408-455)||(25691682-25691729)
chr7 (408-455)||(27421516-27421563)
chr7 (408-458)||(9355963-9356013)
chr7 (594-704)||(21861350-21861460)
chr7 (408-462)||(21991606-21991660)
chr7 (408-457)||(5657618-5657667)
[»] chr6 (14 HSPs)
chr6 (408-458)||(4318958-4319008)
chr6 (407-457)||(24662188-24662238)
chr6 (584-672)||(6542893-6542981)
chr6 (408-459)||(7055350-7055401)
chr6 (408-458)||(8513232-8513282)
chr6 (584-704)||(12330097-12330217)
chr6 (99-155)||(12845975-12846031)
chr6 (584-704)||(13353247-13353367)
chr6 (584-704)||(33796372-33796492)
chr6 (408-459)||(3880074-3880125)
chr6 (664-703)||(27993560-27993599)
chr6 (408-455)||(30353493-30353540)
chr6 (408-458)||(5627390-5627440)
chr6 (409-458)||(19631748-19631797)
[»] chr3 (22 HSPs)
chr3 (408-458)||(21193596-21193646)
chr3 (408-458)||(35844316-35844366)
chr3 (593-642)||(29575870-29575919)
chr3 (408-457)||(51213117-51213166)
chr3 (628-704)||(19954370-19954446)
chr3 (408-460)||(40552395-40552447)
chr3 (584-704)||(45828065-45828185)
chr3 (324-387)||(42204670-42204733)
chr3 (409-454)||(38392628-38392673)
chr3 (409-458)||(40640634-40640683)
chr3 (409-458)||(42665541-42665590)
chr3 (409-466)||(49359628-49359685)
chr3 (408-456)||(11835742-11835790)
chr3 (408-460)||(26941396-26941448)
chr3 (408-459)||(3655338-3655389)
chr3 (408-455)||(46297898-46297945)
chr3 (409-459)||(7327620-7327670)
chr3 (660-706)||(21888527-21888573)
chr3 (408-458)||(48354931-48354981)
chr3 (409-455)||(53818509-53818555)
chr3 (409-454)||(23165838-23165883)
chr3 (408-457)||(45174494-45174543)
[»] scaffold0692 (1 HSPs)
scaffold0692 (593-704)||(5672-5783)
[»] scaffold0092 (1 HSPs)
scaffold0092 (584-698)||(5701-5815)
[»] scaffold0009 (2 HSPs)
scaffold0009 (408-458)||(100820-100870)
scaffold0009 (408-459)||(42346-42397)
[»] scaffold0519 (1 HSPs)
scaffold0519 (584-704)||(1962-2082)
[»] scaffold0002 (2 HSPs)
scaffold0002 (408-459)||(132-183)
scaffold0002 (408-458)||(408705-408755)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 458
Target Start/End: Original strand, 47073267 - 47073706
Alignment:
Q  18 agcaattcccaccaggtgcagaaaacactatggacattccactaaacatgaacaaattccttgaactagcttatcttcttaaagatgatattattgagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47073267 agcaattcccaccaggtgcagaaaacactatggacattccactaaacatgaacaaattccttgaactagcttatcttcttaaagatgatattattgagat 47073366  T
Q  118 tctcaaaacatcaaaacctgattgggttttctacgattatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47073367 tctcaaaacatcaaaacctgattgggttttctacgattatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagc 47073466  T
Q  218 ataacaccagcttgcaacatatgcatacagaattacagcataatttggagaagataaattttggagagaaagagatttgattaagcagatggaattttgg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47073467 ataacaccagcttgcaacatatgcatacagaattacagcataatttggagaagataaattttggagagaaagagatttgattaagcagat-gaattttgg 47073565  T
Q  318 agagaaacggttttagagttcgagaatgtgaattttggagaagatgaattttgattaaccaagacagtatatgctcaatgattggttagagttaacttca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47073566 agagaaacggttttagagttcgagaatgtgaattttggagaagatgaattttgattaaccaagacagtatatgctcaatgattggttagagttaacttca 47073665  T
Q  418 ccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  47073666 ccaaaaaagtcattatcatgactttaccatagaattttcct 47073706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 261 - 383
Target Start/End: Complemental strand, 51204922 - 51204800
Alignment:
Q  261 tttggagaagataaattttggagagaaa-gagatttgattaagcagatggaattttggagagaaacggttttagagttcgagaatgtgaattttggagaa 359  Q
    |||||||||||| ||||||| ||||||| | |||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  51204922 tttggagaagatgaattttgaagagaaaagggatttgattaagcagatg-aattttggagagaaaaggttttagggttcgagaatgtgaattttggagaa 51204824  T
Q  360 gatgaattttgattaaccaagaca 383  Q
    |||||||||||||||| |||||||    
T  51204823 gatgaattttgattaagcaagaca 51204800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Complemental strand, 51204949 - 51204902
Alignment:
Q  324 acggttttagagttcgagaatgtgaattttggagaagatgaattttga 371  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  51204949 acggttttagggttcgagaatgtgaattttggagaagatgaattttga 51204902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 25701219 - 25701269
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  25701219 gttaactttaccaaaaaagtcattatcatgacttcaccataaaattttcct 25701269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 408 - 463
Target Start/End: Complemental strand, 25184162 - 25184107
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctatata 463  Q
    |||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||    
T  25184162 gttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcctatata 25184107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 2704560 - 2704511
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  2704560 ttaacttcaccagaaaagtcattttcatgacttcaccataaaattttcct 2704511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 22231346 - 22231226
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| ||  |||| | |||| || ||||||||||||| |||||||       
T  22231346 ttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaaaatccattgggccacctgctatcaggtttccgctatcggg 22231247  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||||||||||||| |||||    
T  22231246 ccacctaccatttatgtccac 22231226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 29954015 - 29954131
Alignment:
Q  99 aagatgatattattgagattctcaaaacatcaaaacctgattgggttttctacgattatggtactgtttggttagcaccaatagctaaaagcctcaacat 198  Q
    |||| ||| ||| |||||| |||||||| ||||| |||||||||||||| || |||||||   ||| ||||||| |  ||||||| ||||||||||||||    
T  29954015 aagacgatgttactgagatactcaaaacttcaaagcctgattgggttttatatgattatgcagctgattggttaccgtcaatagcgaaaagcctcaacat 29954114  T
Q  199 agcttctgttcattaca 215  Q
      ||| || ||||||||    
T  29954115 tccttgtgctcattaca 29954131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 680
Target Start/End: Complemental strand, 35819166 - 35819070
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatc 680  Q
    |||||||| ||||||||||  |||||||| ||||| |||||| |||||||| ||||  | ||||| | |||| || ||||||||||||| |||||||    
T  35819166 ttttgtgaggttgtgttaggcccaaccacgatttttaagatggcatcagagtctctctaagatccattgggccacctgctatcaggtttccgctatc 35819070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 47253798 - 47253751
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  47253798 gttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 47253751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 52516646 - 52516599
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||    
T  52516646 gttaacttcaccataaaagtcattctcatgacttcaccataaaatttt 52516599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 9139296 - 9139246
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||| | ||||||||| |||||| |||||||||    
T  9139296 gttaacttcaccaaaaaagtcaatttcatgacttcaccatagaattttcct 9139246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 32912742 - 32912792
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||||    
T  32912742 gttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcct 32912792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 34361653 - 34361703
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||||    
T  34361653 gttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcct 34361703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 35021197 - 35021247
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  35021197 gttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcct 35021247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 55478057 - 55478107
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||| ||||| ||||||||| |||||| |||||||||    
T  55478057 gttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcct 55478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 7703566 - 7703517
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||||||||| ||||||||||| |||| ||||||||    
T  7703566 gttaacttcaccagaaaagtcattctcatgactttaacatagaattttcc 7703517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 704
Target Start/End: Complemental strand, 35797032 - 35796895
Alignment:
Q  567 ctcatctcataaaccaattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatc 666  Q
    |||| |||| |||||| |||||||  |||||||||   ||||| || ||||  ||||||  ||||||||||||||  ||||| | || |||| |||||||    
T  35797032 ctcacctcacaaaccagttttgtggggttgtgttaagcccaactaccatttctaagatggtatcagagcctcttcgagatccattggactacctgctatc 35796933  T
Q  667 aggttttcgctatcaaaccacctaccatttatatccac 704  Q
    |||||| |||||||   ||||| ||||||||| |||||    
T  35796932 aggtttccgctatcgggccacccaccatttatctccac 35796895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 459
Target Start/End: Original strand, 37663895 - 37663952
Alignment:
Q  402 gttagagttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||| |||||||||| ||||||||||||| | ||||||| |||||| ||||||||||    
T  37663895 gttagtgttaacttcatcaaaaaagtcattcttatgacttcaccatagaattttccta 37663952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 38812260 - 38812309
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  38812260 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 38812309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 705
Target Start/End: Complemental strand, 40717479 - 40717358
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| ||  |||| | |||| || ||| ||||||||| |||||||  |    
T  40717479 ttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaatatccattgggccacctgccatcaggtttccgctatcgga 40717380  T
Q  684 ccacctaccatttatatccaca 705  Q
    ||||| ||||||||| ||||||    
T  40717379 ccacccaccatttatgtccaca 40717358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 49878683 - 49878635
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||||    
T  49878683 ttaacttcaccaaaaaagtcattatcat-acttcaccatagaattttcct 49878635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 54995799 - 54995848
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||||||||||||||||||||||| | | || |||||||||    
T  54995799 ttaacttcaccaaaaaagtcattatcatgacttcatcgtagaattttcct 54995848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 4598042 - 4597994
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttc 456  Q
    ||||||||||||| |||||||||| | ||||||| ||||||||||||||    
T  4598042 gttaacttcaccagaaaagtcattctaatgacttcaccataaaattttc 4597994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 564 - 640
Target Start/End: Complemental strand, 21750335 - 21750259
Alignment:
Q  564 attctcatctcataaaccaattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctctt 640  Q
    ||||||| |||| |||||| |||||||| ||||||||||| |||| ||| | ||| ||||||  |||||||||||||    
T  21750335 attctcacctcacaaaccagttttgtgaggttgtgttagacccaatcacgaattttaagatggtatcagagcctctt 21750259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 704
Target Start/End: Original strand, 35788714 - 35788826
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttc-aggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctac 691  Q
    ||||||||||  |||||||| ||||  ||||||  ||||||||||| || | ||||||| |||| || ||||||||||||| || |||||  ||||| ||    
T  35788714 gttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatcaggtttccgttatcaggccacccac 35788813  T
Q  692 catttatatccac 704  Q
    ||||||| |||||    
T  35788814 catttatgtccac 35788826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 9743636 - 9743585
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    |||| ||||||||||||||||||  ||||||||||||||| |||||| ||||    
T  9743636 ttaatttcaccaaaaaagtcatttacatgactttaccatagaattttactat 9743585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 20097490 - 20097537
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||| |||||||||| ||||||||| |||||| ||||||    
T  20097490 gttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 20097537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 27396665 - 27396618
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||| |||||||||| ||||||||| |||||| ||||||    
T  27396665 gttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 27396618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 34948259 - 34948306
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||| ||| |||||||||| ||||||||| |||||||||||||    
T  34948259 gttaacttcgccagaaaagtcattctcatgacttcaccataaaatttt 34948306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 2266856 - 2266902
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    |||||||||| | |||||||||||||||||||| |||||| ||||||    
T  2266856 ttaacttcactagaaaagtcattatcatgacttcaccatataatttt 2266902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 7152268 - 7152318
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||| |||| ||||||||||| |||||||| |||||| |||||||||    
T  7152268 gttaactttaccagaaaagtcattagcatgacttcaccatagaattttcct 7152318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 19440810 - 19440860
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgacttt-accataaaattttcc 457  Q
    |||||| ||||||||||||||||| |||||||||| |||||| ||||||||    
T  19440810 gttaacatcaccaaaaaagtcattctcatgactttcaccatagaattttcc 19440860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 454
Target Start/End: Complemental strand, 32592142 - 32592096
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattt 454  Q
    |||||||||| ||||||||||||||| ||||||| || |||||||||    
T  32592142 gttaacttcatcaaaaaagtcattataatgacttcacaataaaattt 32592096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 36493851 - 36493897
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||||||||| ||| ||||||||| |||||| ||||||    
T  36493851 ttaacttcaccaaaaaagttattttcatgacttcaccatagaatttt 36493897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 457
Target Start/End: Original strand, 53337570 - 53337624
Alignment:
Q  403 ttagagttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||| |||||||| | || |||| |||||||||||||||||||||| ||||||||    
T  53337570 ttagtgttaactttatcagaaaaatcattatcatgactttaccatagaattttcc 53337624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 39397967 - 39397918
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||||||||| | ||||||| |||||| ||||||||    
T  39397967 gttaacttcaccataaaagtcattctaatgacttcaccatagaattttcc 39397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 26970699 - 26970259
Alignment:
Q  18 agcaattcccaccaggtgcagaaaacactatggacattccactaaacatgaacaaattccttgaactagcttatcttcttaaagatgatattattgagat 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970699 agcaattcccaccaggtgctgaaaacactatggacattccactaaacatgaacaaattccttgaactagcttatcttcttaaagatgatattattgagat 26970600  T
Q  118 tctcaaaacatcaaaacctgattgggttttctacgattatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26970599 tctcaaaacatcaaaacctgattgggttttctacgattatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagc 26970500  T
Q  218 ataacaccagcttgcaacatatgcatacagaattacagcataatttggagaagataaattttggagagaaagagatttgattaagcagatggaattttgg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26970499 ataacaccagcttgcaacatatgcatacagaattacagcataatttggagaagataaattttggagagaaagagatttgattaagcagat-gaattttgg 26970401  T
Q  318 agagaaacggttttagagttcgagaatgtgaattttggagaagatgaattttgattaaccaagacagtatatgctcaatgattggttagagttaacttca 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26970400 agagaaacggttttagagttcgagaatgtgaattttggagaagatgaattttgattaatcaagacagtatatgctcaatgattggttagagttaacttca 26970301  T
Q  418 ccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26970300 ccaaaaaagtcattatcatgactttaccataaaattttccta 26970259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 261 - 382
Target Start/End: Original strand, 17695595 - 17695714
Alignment:
Q  261 tttggagaagataaattttggagagaaagagatttgattaagcagatggaattttggagagaaacggttttagagttcgagaatgtgaattttggagaag 360  Q
    |||| |||| || |||||||||||||||  ||||||||||||| |||| |||||||||||||||| ||||||| || |||||||||||||||||||||||    
T  17695595 tttgaagaaaatgaattttggagagaaaaggatttgattaagctgatg-aattttggagagaaactgttttagggt-cgagaatgtgaattttggagaag 17695692  T
Q  361 atgaattttgattaaccaagac 382  Q
    ||||||||||||||| ||||||    
T  17695693 atgaattttgattaagcaagac 17695714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 7079205 - 7079259
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctatat 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7079205 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccaatat 7079259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 567 - 704
Target Start/End: Original strand, 16162962 - 16163099
Alignment:
Q  567 ctcatctcataaaccaattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatc 666  Q
    |||| |||||||||| ||||||||  |||||||||||  ||||||||||||| ||||||  |||| ||||||| || |||||   |||| || |||||||    
T  16162962 ctcacctcataaaccgattttgtggggttgtgttagactcaaccacaatttttaagatgatatcaaagcctctccaagatccaatgggccacctgctatc 16163061  T
Q  667 aggttttcgctatcaaaccacctaccatttatatccac 704  Q
    |||||| |||||||   ||||||||||||||| |||||    
T  16163062 aggtttccgctatcgggccacctaccatttatgtccac 16163099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 10182140 - 10182189
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  10182140 ttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 10182189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 567 - 704
Target Start/End: Original strand, 26176937 - 26177074
Alignment:
Q  567 ctcatctcataaaccaattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatc 666  Q
    |||| |||| |||||  |||||||  ||||||||||  |||||| | ||||  ||||||  |||||||||||| || ||||| | |||| || |||||||    
T  26176937 ctcacctcaaaaaccggttttgtggggttgtgttaggcccaaccgcgatttctaagatgatatcagagcctctccaagatccattgggccacctgctatc 26177036  T
Q  667 aggttttcgctatcaaaccacctaccatttatatccac 704  Q
    || ||| |||||||  |||||| |||||||||||||||    
T  26177037 agatttccgctatcggaccacccaccatttatatccac 26177074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 47682624 - 47682673
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  47682624 gttaacttcaccaaaaaagtcactctcatgacttcaccataaaattttcc 47682673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 18422696 - 18422644
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||||||    
T  18422696 gttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcctat 18422644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 15752074 - 15752027
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  15752074 gttaacttcaccaaaaaagtcattctcatgacttcaccatagaatttt 15752027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 30254903 - 30254852
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||| ||||||||||||||| ||||||| |||||| ||||||||||    
T  30254903 gttaacttcatcaaaaaagtcattattatgacttcaccatagaattttccta 30254852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 1547332 - 1547282
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  1547332 gttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 1547282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 458
Target Start/End: Original strand, 4150490 - 4150536
Alignment:
Q  412 acttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||| |||||||||||||||||||| |||||| |||||||||    
T  4150490 acttcaccagaaaagtcattatcatgacttcaccatagaattttcct 4150536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 19899900 - 19899950
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||| ||||||| ||||||| |||||| |||||||||    
T  19899900 gttaacttcaccaaaaaaatcattattatgacttcaccatagaattttcct 19899950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 23999392 - 23999338
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctatat 462  Q
    |||||||||||||||||| ||||| | ||||||| ||||||||||||||| ||||    
T  23999392 gttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttccaatat 23999338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 32267079 - 32267029
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||| |||||||||||| | ||||||| ||||||||||||||||    
T  32267079 gttaacttcacaaaaaaagtcattcttatgacttcaccataaaattttcct 32267029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 3309193 - 3309144
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||| |||| |||||||||| |||||||||||||||| ||||||||    
T  3309193 gttaactttaccagaaaagtcattctcatgactttaccatagaattttcc 3309144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 27227608 - 27227657
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||| ||||| ||||||||| |||||| ||||||||    
T  27227608 gttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcc 27227657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 42663785 - 42663830
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattt 454  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||    
T  42663785 ttaacttcactaaaaaagtcattatcatgacttcaccatagaattt 42663830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 10922772 - 10922724
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttc 456  Q
    |||||||||||||||||| ||||| |||||| || ||||||||||||||    
T  10922772 gttaacttcaccaaaaaaatcattctcatgatttcaccataaaattttc 10922724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 704
Target Start/End: Original strand, 26229623 - 26229732
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctacc 692  Q
    |||||||||| |||||||| |||||  |||||  |||||||| |||| || ||||| | | || ||||| ||||||| ||||||||||||  |||| |||    
T  26229623 gttgtgttaggtccaaccaaaattt--aagatagcatcagagtctctccatgatccattgagccacttgttatcaggatttcgctatcaagtcacccacc 26229720  T
Q  693 atttatatccac 704  Q
    |||||| |||||    
T  26229721 atttatgtccac 26229732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 27118378 - 27118330
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||| | ||||||||||||| ||||||||||| |||||||||||||    
T  27118378 ttaactttatcaaaaaagtcattttcatgactttatcataaaattttcc 27118330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 42721082 - 42721035
Alignment:
Q  410 taacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||| ||||| ||||||||| |||||| ||||||||    
T  42721082 taacttcaccaaaaaaatcattttcatgacttcaccatagaattttcc 42721035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 628 - 698
Target Start/End: Complemental strand, 4112769 - 4112699
Alignment:
Q  628 atcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctaccatttat 698  Q
    |||||||||||| || ||||| | || | || ||||||||||||| ||||||| ||||||| |||||||||    
T  4112769 atcagagcctctccaagatccattggaccacctgctatcaggtttccgctatcgaaccacccaccatttat 4112699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 11742481 - 11742531
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| |||| |||| || |||||||||||||    
T  11742481 gttaacttcaccagaaaagtcattctcataacttcacgataaaattttcct 11742531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 459
Target Start/End: Original strand, 13876919 - 13876969
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||||| |||||||||| |||| |||| |||||| ||||||||||    
T  13876919 ttaacttcaccataaaagtcattttcataacttcaccatagaattttccta 13876969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 16415690 - 16415640
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| ||| || |||||||||    
T  16415690 gttaacttcaccagaaaagtcattctcatgacttcaccttagaattttcct 16415640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 37619027 - 37619077
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||| | || |||| |||||| |||||||||    
T  37619027 gttaacttcaccaaaaaagtcattcttataacttcaccatagaattttcct 37619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 412 - 457
Target Start/End: Complemental strand, 47279204 - 47279159
Alignment:
Q  412 acttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||| ||||||||| |||||| | ||||||    
T  47279204 acttcaccaaaaaagtcattctcatgacttcaccatagatttttcc 47279159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 557 - 787
Target Start/End: Complemental strand, 9398152 - 9397920
Alignment:
Q  557 tgaggttatt-ctcatctcataaaccaattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggc 655  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  9398152 tgaggttatttctcatctcataaaccgattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctctttaggatccatcgggc 9398053  T
Q  656 tacttgctatcaggttttcgctatcaaaccacctaccatttatatccac-acccatttatatcaaccctccaaatgttagagtctcacaatgacctgaat 754  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||    
T  9398052 tacttgttatcaggttttcgctatcaaaccacctaccatttatatccacaaaccatttatatcaaccctccaaatgttagagtctcacgatgacctgaat 9397953  T
Q  755 aactgtttacatgtggggctattttcatctcac 787  Q
    |||||||||||||||||||||||||||||||||    
T  9397952 aactgtttacatgtggggctattttcatctcac 9397920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 309 - 450
Target Start/End: Original strand, 41190919 - 41191060
Alignment:
Q  309 gaattttggagagaaacggttttagagttcgagaatgtgaattttggagaagatgaattttgattaaccaagacagtatatgctcaatgattggtt--ag 406  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||  ||    
T  41190919 gaattttggagagaaacggttttagggttcgagaatgtgaattttggagaagatgaattttgattaagcaagacag--tatgctcaatgattggttacag 41191016  T
Q  407 agttaacttcaccaaaaaagtcattatcatgactttaccataaa 450  Q
     |||||||||||||||||||||||| |||| |||| ||||||||    
T  41191017 ggttaacttcaccaaaaaagtcattttcataacttcaccataaa 41191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 41190811 - 41190918
Alignment:
Q  155 tatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagcataacaccagcttgcaacatatg-catacagaattac 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||    
T  41190811 tatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattacagcataacaccagcttggaacatatgacatacataattac 41190910  T
Q  254 agcataat 261  Q
    | ||||||    
T  41190911 aacataat 41190918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 458 - 517
Target Start/End: Complemental strand, 9398210 - 9398151
Alignment:
Q  458 tatatataaacaactcaaaggagttatcccacatcaagaccgtatattctcctccaaatg 517  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9398210 tatatataaacaactcaaaggagttatcccacatcaacaccgtatattctcctccaaatg 9398151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 698
Target Start/End: Original strand, 20301307 - 20301421
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||| ||||||||||  |||||||| ||||  ||||||  ||||||||||||||| ||||| | |||| || ||||||||||||| |||||||  |    
T  20301307 ttttgtgaggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctatcgga 20301406  T
Q  684 ccacctaccatttat 698  Q
    ||||| |||||||||    
T  20301407 ccacccaccatttat 20301421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 584 - 698
Target Start/End: Original strand, 21087939 - 21088053
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||| ||||||||||  |||||||| ||||  ||||||  ||||||||||||||| ||||| | |||| || ||||||||||||| |||||||  |    
T  21087939 ttttgtgaggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctatcgga 21088038  T
Q  684 ccacctaccatttat 698  Q
    ||||| |||||||||    
T  21088039 ccacccaccatttat 21088053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 41190754 - 41190804
Alignment:
Q  18 agcaattcccaccaggtgcagaaaacactatggacattccactaaacatga 68  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41190754 agcaattcccaccaggtgcagaaaacactatggacattccagtaaacatga 41190804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 593 - 703
Target Start/End: Original strand, 41790713 - 41790823
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctacc 692  Q
    ||||||||||  |||||||| ||||  ||||||  ||||||||||||||| ||||| | |||| || ||||||||||||| ||||||| | ||||| |||    
T  41790713 gttgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctatcgagccacccacc 41790812  T
Q  693 atttatatcca 703  Q
    |||||| ||||    
T  41790813 atttatgtcca 41790823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 592 - 704
Target Start/End: Original strand, 8084181 - 8084293
Alignment:
Q  592 agttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctac 691  Q
    |||||||||||| |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || ||||||||||||||||||||   | |||| ||    
T  8084181 agttgtgttagacccaaccacgatttctaagatggtatcagagcctctccaagatccattgggccacatgctatcaggttttcgctattggatcacccac 8084280  T
Q  692 catttatatccac 704  Q
    ||||||| |||||    
T  8084281 catttatgtccac 8084293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 4108912 - 4108961
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||    
T  4108912 ttaactttaccaaaaaagtcattttcatgacttcaccataaaattttcct 4108961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 4133150 - 4133199
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  4133150 gttaacttcaccaaaaaagtcattctgatgacttgaccataaaattttcc 4133199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 1150247 - 1150298
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||||||||    
T  1150247 gttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttccta 1150298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 660 - 703
Target Start/End: Complemental strand, 7289397 - 7289354
Alignment:
Q  660 tgctatcaggttttcgctatcaaaccacctaccatttatatcca 703  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  7289397 tgctatcaggttttcgctatcaaaccacccaccatttatgtcca 7289354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 1204975 - 1204925
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| ||| ||||||||||||    
T  1204975 gttaacttcaccagaaaagtcattctcatgacttcaccgtaaaattttcct 1204925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 24823414 - 24823464
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||| |||| |||||||||||  ||||||||    
T  24823414 gttaacttcaccaaaaaagtcattctcataactttaccatagtattttcct 24823464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 43643737 - 43643787
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||| ||||||| ||||||||| |||||| |||||||||    
T  43643737 gttaacttcaccaaaatagtcattctcatgacttcaccatagaattttcct 43643787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 5018058 - 5018013
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattt 454  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||    
T  5018058 ttaacttcactaaaaaagtcattatcatgacttcaccatagaattt 5018013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 10555344 - 10555393
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| ||||||||| ||| || ||||||||    
T  10555344 gttaacttcaccaaaaaagtcattctcatgacttcaccgtagaattttcc 10555393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 15009290 - 15009241
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||||||    
T  15009290 gttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttcc 15009241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 41362566 - 41362517
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  41362566 gttaacttcaccaaaaaagtcattttcataacttcaccatagaattttcc 41362517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 6098661 - 6098709
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||||||||| ||| ||||||||| |||||| ||||||||    
T  6098661 ttaacttcaccaaaaaagttattttcatgacttcaccatagaattttcc 6098709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 11232467 - 11232347
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || || |||||||||| ||||||| |     
T  11232467 ttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgag 11232368  T
Q  684 ccacctaccatttatatccac 704  Q
     |||| ||||||||| |||||    
T  11232367 tcacccaccatttatgtccac 11232347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 456
Target Start/End: Original strand, 23176763 - 23176811
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccata-aaattttc 456  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  23176763 ttaacttcaccaaaaaagtcattttcatgacttcaccatagaaattttc 23176811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 28220955 - 28221003
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||| |||||||||| ||||||||||| |||| ||||||||    
T  28220955 ttaacttcaccagaaaagtcattttcatgactttatcatagaattttcc 28221003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 30654725 - 30654777
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    |||||||||||||||||| ||| | | ||||||| ||||||||||||||||||    
T  30654725 gttaacttcaccaaaaaaatcactcttatgacttcaccataaaattttcctat 30654777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 448
Target Start/End: Original strand, 37970661 - 37970701
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccata 448  Q
    |||||||||||||||||||||||| ||||||||| ||||||    
T  37970661 gttaacttcaccaaaaaagtcattctcatgacttcaccata 37970701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Complemental strand, 465890 - 465843
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||| |||||||||| | ||||||| |||||||||||||    
T  465890 gttaacttcaccacaaaagtcattttaatgacttcaccataaaatttt 465843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 455
Target Start/End: Original strand, 6446709 - 6446752
Alignment:
Q  412 acttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||    
T  6446709 acttcaccagaaaagtcattatcatgacttcaccatagaatttt 6446752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 7891090 - 7891137
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||| |||||||||||| ||||||||| |||||| ||||||    
T  7891090 gttaacttcacaaaaaaagtcattctcatgacttcaccatagaatttt 7891137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 38110401 - 38110350
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    ||||||||| || |||| ||||| ||||||||| ||||||||||||||||||    
T  38110401 ttaacttcatcagaaaaatcattttcatgacttcaccataaaattttcctat 38110350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 564 - 618
Target Start/End: Complemental strand, 28212928 - 28212874
Alignment:
Q  564 attctcatctcataaaccaattttgtgaagttgtgttagatccaaccacaatttt 618  Q
    ||||||||||||||||||| |||| ||||||||||||| |  ||||||| |||||    
T  28212928 attctcatctcataaaccagttttatgaagttgtgttaaactcaaccacgatttt 28212874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 35735984 - 35736030
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||||||||||||| | ||||||| |||||| ||||||    
T  35735984 ttaacttcaccaaaaaagtcattctaatgacttcaccatagaatttt 35736030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 38644026 - 38643976
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||| ||||||||||||||| |||||| || |||||| |||||||||    
T  38644026 gttaacttgaccaaaaaagtcattctcatgatttcaccatagaattttcct 38643976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 5300088 - 5300137
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||  |||||||||||| ||||||||| |||||| ||||||||    
T  5300088 gttaacttcattaaaaaagtcattctcatgacttcaccatagaattttcc 5300137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 639 - 700
Target Start/End: Complemental strand, 8466706 - 8466645
Alignment:
Q  639 ttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctaccatttatat 700  Q
    |||| ||||| | |||| || ||||||||||||| ||||||||| ||||| |||||||||||    
T  8466706 ttcaagatccattgggccacctgctatcaggtttccgctatcaagccacccaccatttatat 8466645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 13307671 - 13307622
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||| ||||| ||||||||| |||||| ||||||||    
T  13307671 gttaacttcaccagaaaaatcattctcatgacttcaccatagaattttcc 13307622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 441
Target Start/End: Original strand, 23854573 - 23854606
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactt 441  Q
    |||||||||||||||||||||||| |||||||||    
T  23854573 gttaacttcaccaaaaaagtcattctcatgactt 23854606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 1e-89; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1354383 - 1354608
Alignment:
Q  18 agcaattcccaccaggtgcagaaaacactatggacattccactaaacatgaacaaattccttgaactagcttatct---tcttaaagatgatattattga 114  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||    |||| |||||||| ||| |||    
T  1354383 agcaactcccaccaggtgcagaaaacactatggacattccaataaacatgaacaaataccttgaactagcctatcaaggtcttcaagatgatgttactga 1354482  T
Q  115 gattctcaaaacatcaaaacctgattgggttttctacgattatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattac 214  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1354483 gattctcaaaacatcaaaacctgattgggttttctatgattatggtactgtttggttagcaccaatagctaaaagcctaaacatagcttctgttcattac 1354582  T
Q  215 agcataacaccagcttgcaacatatg 240  Q
    ||||||||||||||||| ||||||||    
T  1354583 agcataacaccagcttggaacatatg 1354608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 1361269 - 1361490
Alignment:
Q  18 agcaattcccaccaggtgcagaaaacactatggacattccactaaacatgaacaaattccttgaactagcttatct---tcttaaagatgatattattga 114  Q
    ||||| |||||||||| |||||||||||||||||||||| || ||||||||||   |||||| | | ||| |||     |||| |||||||| ||| |||    
T  1361269 agcaactcccaccaggcgcagaaaacactatggacattcaaccaaacatgaaccgtttccttaagcaagcctatgaaggtcttcaagatgatgttactga 1361368  T
Q  115 gattctcaaaacatcaaaacctgattgggttttctacgattatggtactgtttggttagcaccaatagctaaaagcctcaacatagcttctgttcattac 214  Q
    |||||||||||||||||||||||||||||||||||| |||| ||  | || |||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  1361369 gattctcaaaacatcaaaacctgattgggttttctatgattttgcaagtggttggttggcaccaatagctaaaagcctcaacatagctgctgctcattac 1361468  T
Q  215 agcataacaccagcttgcaaca 236  Q
    | ||||||||||||||| ||||    
T  1361469 aacataacaccagcttggaaca 1361490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 261 - 387
Target Start/End: Complemental strand, 22963742 - 22963617
Alignment:
Q  261 tttggagaagataaattttggagagaaagagatttgattaagcagatggaattttggagagaaacggttttagagttcgagaatgtgaattttggagaag 360  Q
    |||||||||||  ||||||  ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |||||||||||||||||||||    
T  22963742 tttggagaagaagaattttttagagaaagagatttgattaagcagatg-aattttggagagaaacagttttagggttcaagaatgtgaattttggagaag 22963644  T
Q  361 atgaattttgattaaccaagacagtat 387  Q
    ||||||||||||||| |||||||||||    
T  22963643 atgaattttgattaagcaagacagtat 22963617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 313 - 387
Target Start/End: Original strand, 22997786 - 22997860
Alignment:
Q  313 tttggagagaaacggttttagagttcgagaatgtgaattttggagaagatgaattttgattaaccaagacagtat 387  Q
    |||||||||||||  |||||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  22997786 tttggagagaaacaattttagggttcaagaatgtgagttttggagaagatgaattttgattaagcaagacagtat 22997860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 628 - 704
Target Start/End: Original strand, 16533402 - 16533478
Alignment:
Q  628 atcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctaccatttatatccac 704  Q
    ||||||||||||||| ||||| | ||||||| |||||||||||||||||||||   ||||| ||||||||| |||||    
T  16533402 atcagagcctcttcaagatccattgggctacctgctatcaggttttcgctatcgggccacccaccatttatgtccac 16533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 41643920 - 41643869
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| ||||    
T  41643920 ttaacttcaccaaaaaagtcattatcatgacttcaccatagaatttttctat 41643869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 14466448 - 14466328
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| ||||| |||||||||| |||||||       
T  14466448 ttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacttgttatcaggtttccgctatcggg 14466349  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  14466348 ccacccaccatttatgtccac 14466328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 16419313 - 16419433
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||| ||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || ||||||||||||| ||||||| |     
T  16419313 ttttgtggggttgtattaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgctatcgag 16419412  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  16419413 ccacccaccatttatgtccac 16419433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 324 - 368
Target Start/End: Original strand, 22997744 - 22997788
Alignment:
Q  324 acggttttagagttcgagaatgtgaattttggagaagatgaattt 368  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  22997744 acggttttagggttcgagaatgtgaattttggagaagaagaattt 22997788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 17071891 - 17071942
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||||||||||||||||||||||  |||||||| |||||| ||||||||||    
T  17071891 gttaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttccta 17071942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 19424782 - 19424833
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||||||||||| ||||| |||| ||||||||| |||||||||||||||||    
T  19424782 gttaacttcaccagaaaagccattctcatgacttcaccataaaattttccta 19424833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 5881580 - 5881526
Alignment:
Q  411 aacttcaccaaaaaagtcattatcatgactttaccataaaattttcctatatata 465  Q
    |||||||||| |||||||||| | ||||||| || ||||||||||||||||||||    
T  5881580 aacttcaccagaaaagtcattttaatgacttcacaataaaattttcctatatata 5881526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 459
Target Start/End: Original strand, 17054251 - 17054301
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||||||||||||||||  |||||||| |||||| ||||||||||    
T  17054251 ttaacttcaccaaaaaagtcattcgcatgacttcaccatagaattttccta 17054301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 369
Target Start/End: Complemental strand, 22963766 - 22963724
Alignment:
Q  327 gttttagagttcgagaatgtgaattttggagaagatgaatttt 369  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  22963766 gttttagggttcgagaatgtgaattttggagaagaagaatttt 22963724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 698
Target Start/End: Complemental strand, 36352197 - 36352083
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  |||||||||| | ||||||||||||| ||||||  || |||| ||||||| ||||| |||||| || || |||||||||| || ||||       
T  36352197 ttttgtggggttgtgttaggttcaaccacaatttttaagatggtattagagtctcttcaagatccatcgggccacctgttatcaggtttccgttatcggg 36352098  T
Q  684 ccacctaccatttat 698  Q
    ||||| |||||||||    
T  36352097 ccacccaccatttat 36352083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 4264231 - 4264284
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctata 461  Q
    |||||||| |||| |||||||||||| ||||||| |||||| ||||||||||||    
T  4264231 gttaactttaccagaaaagtcattatgatgacttcaccatagaattttcctata 4264284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 19093461 - 19093412
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||| |||| ||||| ||||||||| ||||||||||||||||    
T  19093461 ttaacttcaccagaaaaatcattctcatgacttcaccataaaattttcct 19093412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 26357626 - 26357577
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||| || |||||||||| ||||||||| |||||||||||||||    
T  26357626 gttaacttcatcagaaaagtcattttcatgacttcaccataaaattttcc 26357577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 34441921 - 34441970
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||| ||||||||||||||| ||||||||| |||||| |||||||||    
T  34441921 ttaactttaccaaaaaagtcattttcatgacttcaccatagaattttcct 34441970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 41465558 - 41465509
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||||||||| ||||||||| |||||| ||||||||    
T  41465558 gttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcc 41465509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 459
Target Start/End: Original strand, 43446463 - 43446512
Alignment:
Q  410 taacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||| ||||||||||| ||||||||| |||||| ||||||||||    
T  43446463 taacttcaccgaaaaagtcattctcatgacttcaccatagaattttccta 43446512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 2029815 - 2029935
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||| ||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || |||||| |||||| |||||||  |    
T  2029815 ttttgtggggttgttttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgggccacctgctattaggtttccgctatcgga 2029914  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  2029915 ccacccaccatttatgtccac 2029935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 18514771 - 18514819
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||| ||||||||||||| ||||||||| || ||||||||||||    
T  18514771 ttaacttcatcaaaaaagtcattctcatgacttcactataaaattttcc 18514819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 704
Target Start/End: Complemental strand, 31001945 - 31001901
Alignment:
Q  660 tgctatcaggttttcgctatcaaaccacctaccatttatatccac 704  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||    
T  31001945 tgctatcaggtttccgctatcatgccacctaccatttatatccac 31001901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 31861943 - 31861895
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  31861943 ttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 31861895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 628 - 704
Target Start/End: Original strand, 34893515 - 34893591
Alignment:
Q  628 atcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctaccatttatatccac 704  Q
    |||||||||||| || ||||| | |||| || | |||||||||||||||||||  |||||| ||||||||| |||||    
T  34893515 atcagagcctctccaagatccattgggccacctactatcaggttttcgctatcggaccacccaccatttatgtccac 34893591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 456
Target Start/End: Complemental strand, 42005437 - 42005390
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttc 456  Q
    ||||||||||||||||| ||||| ||||||||| |||||| |||||||    
T  42005437 ttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttc 42005390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 4166971 - 4166921
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| || |||||| |||||| |||||||||    
T  4166971 gttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttcct 4166921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 18494422 - 18494472
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| |||| | |||||||||    
T  18494422 gttaacttcaccagaaaagtcattttcatgacttcaccacagaattttcct 18494472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 39167517 - 39167567
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||| ||||||| ||||| || |||||| ||||||||||||||||    
T  39167517 gttaacttcatcaaaaaaatcattctcgtgacttcaccataaaattttcct 39167567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 704
Target Start/End: Complemental strand, 40149264 - 40149154
Alignment:
Q  594 ttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctacca 693  Q
    |||||||||  |||||||||||||  ||||||  ||||||||||||||| ||||| | |||  || ||||||||| |||  ||||||  |||||| || |    
T  40149264 ttgtgttaggcccaaccacaatttctaagatggtatcagagcctcttcaagatccattgggtcacctgctatcagatttcagctatcggaccacccacta 40149165  T
Q  694 tttatatccac 704  Q
    ||||| |||||    
T  40149164 tttatgtccac 40149154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 11366535 - 11366588
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctata 461  Q
    ||||| |||||||||||||||||| | |||| || |||||| ||||||||||||    
T  11366535 gttaatttcaccaaaaaagtcattcttatgatttcaccatagaattttcctata 11366588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 19313901 - 19313852
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||||||||| | ||||||| |||||| ||||||||    
T  19313901 gttaacttcaccagaaaagtcattctaatgacttcaccatagaattttcc 19313852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 29242293 - 29242342
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||  |||| ||||||||| |||||| |||||||||    
T  29242293 ttaacttcaccaaaaaaaccattttcatgacttcaccatagaattttcct 29242342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 33551140 - 33551189
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||| |||||||||||| ||||||||| ||| || ||||||||    
T  33551140 gttaacttcactaaaaaagtcattctcatgacttcaccgtagaattttcc 33551189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 261 - 369
Target Start/End: Complemental strand, 10053687 - 10053580
Alignment:
Q  261 tttggagaagataaattttggagagaaagagatttgattaagcagatggaattttggagagaaacggttttagagttcgagaatgtgaattttggagaag 360  Q
    |||||||||||| |||||||||||||||  ||||||||||||| |||| ||||||||||||||||  |||||| ||| |||||| ||||||||||||| |    
T  10053687 tttggagaagatgaattttggagagaaaatgatttgattaagcggatg-aattttggagagaaacaattttagtgtttgagaatatgaattttggagagg 10053589  T
Q  361 atgaatttt 369  Q
    |||||||||    
T  10053588 atgaatttt 10053580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 21266471 - 21266368
Alignment:
Q  269 agataaattttggagagaaagagatttgattaagcagatggaattttggagagaaacggttttagagttcgagaatgtgaattttggagaagatgaattt 368  Q
    |||| |||||||||||||||||||||||||||||| |||  || |||||||||||||  |||||  ||| ||| |||||||||||||| |||||||||||    
T  21266471 agatgaattttggagagaaagagatttgattaagcggat--aaatttggagagaaacaattttaaggtttgaggatgtgaattttggaaaagatgaattt 21266374  T
Q  369 tgatta 374  Q
    ||||||    
T  21266373 tgatta 21266368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 18333737 - 18333617
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| | ||  ||||||  ||||||||||||||| ||||| |||||| || |||||||||||||||||||||       
T  18333737 ttttgtggggttgtgttaggcccaaccacgaattctaagatggtatcagagcctcttcaagatccatcgggccacctgctatcaggttttcgctatcggg 18333638  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  18333637 ccacccaccatttatgtccac 18333617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 5112440 - 5112489
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  5112440 ttaacttcaccaaaaaagtcattttcatgacttcaccataaaattttcct 5112489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 370
Target Start/End: Complemental strand, 10053714 - 10053668
Alignment:
Q  324 acggttttagagttcgagaatgtgaattttggagaagatgaattttg 370  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||    
T  10053714 acggttttagggttcaagaatgtgaattttggagaagatgaattttg 10053668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 12910398 - 12910349
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  12910398 ttaacttcaccaaaaaagtcattttcatgacttcaccatagaattttcct 12910349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 35826610 - 35826659
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  35826610 ttaacttcacaaaaaaagtcattatcatgacttcaccatagaattttcct 35826659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 8742013 - 8742063
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  8742013 gttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8742063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 19119908 - 19119858
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  19119908 gttaacttcaccacaaaagtcattctcatgacttcaccatagaattttcct 19119858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 15724539 - 15724490
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| |||| |||| |||||| ||||||||    
T  15724539 gttaacttcaccaaaaaagtcattctcataacttcaccatagaattttcc 15724490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 22616542 - 22616493
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  22616542 ttaacttcaccagaaaagtcattttcatgacttcaccatagaattttcct 22616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 24346775 - 24346654
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcct-cttcaggatccgtcgggctacttgctatcaggttttcgctatcaa 682  Q
    |||||||  ||||||||||| |||||||| ||||| ||||||  |||||||||| || || ||||| | |||| || ||||||||||||| || ||||      
T  24346775 ttttgtggggttgtgttagacccaaccacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccgttatcgg 24346676  T
Q  683 accacctaccatttatatccac 704  Q
     ||||| ||||||||| |||||    
T  24346675 gccacccaccatttatgtccac 24346654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 26317810 - 26317859
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| ||||||||| | |||| ||||||||    
T  26317810 gttaacttcaccaaaaaagtcattttcatgacttcatcatagaattttcc 26317859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 1429271 - 1429323
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    |||||||||||||||| ||||||| ||||||||| |||||| | |||||||||    
T  1429271 gttaacttcaccaaaagagtcattttcatgacttcaccatagatttttcctat 1429323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 9200282 - 9200230
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    ||||||||||||| |||||| ||| | ||||||| ||||||||||||||||||    
T  9200282 gttaacttcaccagaaaagttattttaatgacttcaccataaaattttcctat 9200230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 9368641 - 9368761
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  ||||||| |||||  ||| ||  ||||||||||||||| ||||| | |||| || ||||||||||||| ||||||   |    
T  9368641 ttttgtggggttgtgttaggcccaaccataatttctaaggtggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctattgga 9368740  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||| ||| |||||    
T  9368741 ccacccaccatgtatgtccac 9368761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 460
Target Start/End: Complemental strand, 35933951 - 35933899
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    |||||||||| ||||||| ||||| ||||||||| |||||| |||||||||||    
T  35933951 gttaacttcatcaaaaaaatcattctcatgacttcaccatacaattttcctat 35933899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 36055874 - 36055926
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctata 461  Q
    |||||||||| | |||||||||| ||||||| | |||||||||||||||||||    
T  36055874 ttaacttcacaagaaaagtcattctcatgacatcaccataaaattttcctata 36055926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 5748477 - 5748434
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaa 451  Q
    |||||||||||||||||||||||| ||||||||| | |||||||    
T  5748477 gttaacttcaccaaaaaagtcattttcatgacttcatcataaaa 5748434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 12164915 - 12164966
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||| | ||||||||||||| ||||||||| ||| |||||||||||||    
T  12164915 gttaactttagcaaaaaagtcattctcatgacttcaccgtaaaattttccta 12164966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 13380544 - 13380493
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||||||||| | |||||||||| ||||||||| |||||||||||| ||||    
T  13380544 gttaacttcactagaaaagtcattctcatgacttcaccataaaatttgccta 13380493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 584 - 679
Target Start/End: Original strand, 15480368 - 15480463
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctat 679  Q
    |||||||  ||| ||||||  |||||||| ||||  ||||||  ||||||||||||||| ||||| | |||| || ||||||||||||| ||||||    
T  15480368 ttttgtggggttctgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatccattgggccacctgctatcaggtttccgctat 15480463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 679
Target Start/End: Complemental strand, 17352710 - 17352612
Alignment:
Q  580 ccaattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctat 679  Q
    ||||||||| |  ||| |||||| ||||||||| ||||  ||||||  ||||||||||||||| ||||| | | || |||||||||||||||| ||||||    
T  17352710 ccaattttgcggggttatgttaggtccaaccaccatttctaagatggtatcagagcctcttcaagatcc-ttgagccacttgctatcaggtttccgctat 17352612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 16004502 - 16004552
Alignment:
Q  408 gttaacttcaccaaaaaagtca-ttatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||||||| || |||||||||||||||| ||||||||    
T  16004502 gttaacttcaccagaaaagtcaattctcatgactttaccatagaattttcc 16004552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 593 - 703
Target Start/End: Complemental strand, 17150497 - 17150387
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctacc 692  Q
    ||||||||||   |||| || ||||| ||||||  ||||||||||||||| ||||| | |||| || | ||||||||||| |||||||   ||||| |||    
T  17150497 gttgtgttaggctcaactacgatttttaagatggtatcagagcctcttcaagatccattgggccacctactatcaggtttccgctatcgggccacccacc 17150398  T
Q  693 atttatatcca 703  Q
    |||||| ||||    
T  17150397 atttatgtcca 17150387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 22974208 - 22974258
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||| ||||| |||| |||| |||||| |||||||||    
T  22974208 gttaacttcaccaaaaaaatcattctcataacttcaccatagaattttcct 22974258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 459
Target Start/End: Complemental strand, 27579087 - 27579037
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||||||||||||| || ||| || || |||||||||||||||||    
T  27579087 ttaacttcaccaaaaaagtcgttttcacgatttcaccataaaattttccta 27579037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 7693279 - 7693230
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||||||||| | ||||||| |||||| ||||||||    
T  7693279 gttaacttcaccagaaaagtcattttaatgacttcaccatagaattttcc 7693230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 21266501 - 21266460
Alignment:
Q  329 tttagagttcgagaatgtgaattttggagaagatgaattttg 370  Q
    ||||| |||||||||||||||||||| || ||||||||||||    
T  21266501 tttagggttcgagaatgtgaattttgtagtagatgaattttg 21266460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 24270143 - 24270023
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcct-cttcaggatccgtcgggctacttgctatcaggttttcgctatcaa 682  Q
    |||||||  ||||||||||| |||||||| ||||| ||||||  |||||||||| || || ||||| | |||| || ||||||||||||| || ||||      
T  24270143 ttttgtggggttgtgttaga-ccaaccacgatttttaagatggtatcagagcctcctccaagatccattgggccacctgctatcaggtttccgttatcgg 24270045  T
Q  683 accacctaccatttatatccac 704  Q
     ||||| ||||||||| |||||    
T  24270044 gccacccaccatttatgtccac 24270023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 40133434 - 40133385
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||| |||||||||| || |||||| |||||| ||||||||    
T  40133434 gttaacttcaccacaaaagtcattttcgtgacttcaccatagaattttcc 40133385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 41667031 - 41666910
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttc-aggatccgtcgggctacttgctatcaggttttcgctatcaa 682  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  ||||||||||| || | ||||||| |||| || ||||||||||||| || ||||      
T  41667031 ttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatcaggtttccgttatcgg 41666932  T
Q  683 accacctaccatttatatccac 704  Q
     ||||| ||||||||| |||||    
T  41666931 gccacccaccatttatgtccac 41666910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 412 - 465
Target Start/End: Original strand, 241024 - 241077
Alignment:
Q  412 acttcaccaaaaaagtcattatcatgactttaccataaaattttcctatatata 465  Q
    |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  241024 acttcaccaaaaaagtcattttcatgacttcaccatagaattttcctatatata 241077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 583 - 704
Target Start/End: Complemental strand, 36277265 - 36277144
Alignment:
Q  583 attttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaa 682  Q
    ||||||||  ||||||||||  |||||||| ||||  ||||||| |||||||||||| || ||||| | |||| || | ||||||||||| |||||||      
T  36277265 attttgtggggttgtgttagtcccaaccacgatttctaagatgttatcagagcctctccaagatccattgggccacctactatcaggtttccgctatcgg 36277166  T
Q  683 accacctaccatttatatccac 704  Q
    |||||| ||||||||| |||||    
T  36277165 accacccaccatttatgtccac 36277144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 18797359 - 18797303
Alignment:
Q  402 gttagagttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  18797359 gttagtgttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcct 18797303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 31485697 - 31485577
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||||||||||||||  | |||||||||||  ||||||  || |||||| || || ||||| | |||| || | ||||||||||||| |||||       
T  31485697 ttttgtgaagttgtgttaggcctaaccacaatttctaagatggtataagagccgctacaagatccattgggccacctactatcaggttttcactatcggg 31485598  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| |||||||||||||||    
T  31485597 ccacccaccatttatatccac 31485577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 31520861 - 31520909
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||||||||||||| ||||||||| | |||||||||||||    
T  31520861 ttaacttcaccaaaaaagtcattttcatgacttcatcataaaattttcc 31520909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 33834237 - 33834357
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || ||||||||||||||| |||||       
T  33834237 ttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacctgctatcaggttttccctatcggg 33834336  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  33834337 ccacccaccatttatgtccac 33834357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 679
Target Start/End: Complemental strand, 36993347 - 36993251
Alignment:
Q  583 attttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctat 679  Q
    |||||||| | ||||||||||||||||||  ||||  ||||||  ||||||||||||||| ||||| | |||| || ||||||||| ||| ||||||    
T  36993347 attttgtggaattgtgttagatccaaccatgatttctaagatggtatcagagcctcttcaagatccattgggccacgtgctatcagatttccgctat 36993251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 409 - 457
Target Start/End: Complemental strand, 37347045 - 37346997
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  37347045 ttaacttcaccaaaaaaatcattttcatgacttcaccataaaattttcc 37346997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 17842723 - 17842773
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||||    
T  17842723 gttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcct 17842773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 32821190 - 32821240
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||| ||||| ||||||||| |||||| |||||||||    
T  32821190 gttaacttcaccaaaaaaatcattttcatgacttcaccatagaattttcct 32821240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 681
Target Start/End: Complemental strand, 26239945 - 26239856
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcct-cttcaggatccgtcgggctacttgctatcaggttttcgctatca 681  Q
    ||||||||||| |||||||||||||  ||||||  |||||||||| || || ||||||| |||| || ||||||||||||| || |||||    
T  26239945 gttgtgttagacccaaccacaatttctaagatggtatcagagcctcctccaagatccgttgggccacctgctatcaggtttccgttatca 26239856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 37109896 - 37109847
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| | ||||||| |||||| ||||||||    
T  37109896 gttaacttcaccaaaaaagtcatttttatgacttcaccatagaattttcc 37109847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 408 - 461
Target Start/End: Complemental strand, 43686065 - 43686012
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctata 461  Q
    |||||||||||| ||||||||||| || |||||| |||||| ||||||||||||    
T  43686065 gttaacttcacccaaaaagtcattttcgtgacttcaccatagaattttcctata 43686012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 456
Target Start/End: Complemental strand, 24211765 - 24211717
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttc 456  Q
    |||||||||||||||||||||||| | ||||||| |||||| |||||||    
T  24211765 gttaacttcaccaaaaaagtcattcttatgacttcaccatagaattttc 24211717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 25620182 - 25620302
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || ||||||||||||| ||||||        
T  25620182 ttttgtggggttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgctattggg 25620281  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  25620282 ccacccaccatttatgtccac 25620302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 680
Target Start/End: Original strand, 28080710 - 28080806
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatc 680  Q
    |||||||  ||| |||||||||||||||| ||||  ||||||  ||||||||||||||| ||||  | |||| || |||||||| |||| |||||||    
T  28080710 ttttgtggggttatgttagatccaaccacgatttctaagatgatatcagagcctcttcaagatctattgggccacctgctatcaagtttccgctatc 28080806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 48928704 - 48928748
Alignment:
Q  412 acttcaccaaaaaagtcattatcatgactttaccataaaattttc 456  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||    
T  48928704 acttcaccagaaaagtcattctcatgacttcaccataaaattttc 48928748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 704
Target Start/End: Original strand, 1596648 - 1596759
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctacc 692  Q
    ||||||||||  | |||||||||||  ||||||  |||||||||||| || ||||| | |||| || || |||||||||| |||||||   ||||| |||    
T  1596648 gttgtgttaggcctaaccacaatttctaagatggtatcagagcctctccaagatccattgggccacatgttatcaggtttccgctatcgggccacccacc 1596747  T
Q  693 atttatatccac 704  Q
    |||||| |||||    
T  1596748 atttatgtccac 1596759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 568 - 679
Target Start/End: Original strand, 21821836 - 21821947
Alignment:
Q  568 tcatctcataaaccaattttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatca 667  Q
    |||||||| ||||| ||||||||   |||||||||  |||||||| ||||  ||||||  ||||||||||||||| ||| ||| |||| |  ||||| ||    
T  21821836 tcatctcacaaaccgattttgtgggattgtgttaggcccaaccacgatttctaagatggtatcagagcctcttcaagatacgttgggccaactgctagca 21821935  T
Q  668 ggttttcgctat 679  Q
    ||||| ||||||    
T  21821936 ggtttccgctat 21821947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 25691682 - 25691729
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||| | |||||||||| ||||||||| |||||||||||||    
T  25691682 gttaacttcacgagaaaagtcattctcatgacttcaccataaaatttt 25691729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 27421516 - 27421563
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    |||||||||||||||||| ||||||||| ||||| |||||| ||||||    
T  27421516 gttaacttcaccaaaaaaatcattatcacgacttcaccatagaatttt 27421563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 9355963 - 9356013
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||| ||||||||||  |||||| ||||||||| ||||||||||||||||    
T  9355963 gttaaattcaccaaaatggtcattctcatgacttcaccataaaattttcct 9356013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 594 - 704
Target Start/End: Original strand, 21861350 - 21861460
Alignment:
Q  594 ttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctacca 693  Q
    |||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || || |||||||||| |||||||   ||||| ||||    
T  21861350 ttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgggccacccacca 21861449  T
Q  694 tttatatccac 704  Q
    ||||| |||||    
T  21861450 tttatgtccac 21861460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 21991660 - 21991606
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctatat 462  Q
    ||||||||||||| |||| ||||| ||||||||| ||| || |||||||||||||    
T  21991660 gttaacttcaccataaaaatcattctcatgacttcaccctagaattttcctatat 21991606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 5657618 - 5657667
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    ||||||||||| | |||||||||| ||||||||| |||||| ||||||||    
T  5657618 gttaacttcactagaaaagtcattctcatgacttcaccatagaattttcc 5657667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 4318958 - 4319008
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||||||||    
T  4318958 gttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcct 4319008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 457
Target Start/End: Original strand, 24662188 - 24662238
Alignment:
Q  407 agttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  24662188 agttaacttcactagaaaagtcattatcatgactttaccatagaattttcc 24662238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 672
Target Start/End: Complemental strand, 6542981 - 6542893
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttt 672  Q
    |||||||  ||||||||||| |||||||| ||||  ||||||  ||||||||||||||| ||||| | |||  ||||||||||||||||    
T  6542981 ttttgtggggttgtgttagacccaaccacgatttcaaagatggtatcagagcctcttcaagatccattgggtcacttgctatcaggttt 6542893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 7055350 - 7055401
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||||||||||| ||||| | ||||||| |||||||||||||||||    
T  7055350 gttaacttcaccaaaaaaatcattcttatgacttcaccataaaattttccta 7055401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 8513282 - 8513232
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  8513282 gttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 8513232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Complemental strand, 12330217 - 12330097
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||| ||||||||||  |||||||| ||||  || |||  |||||||||||| || ||||| | |||| || ||||||||||||| ||| |||       
T  12330217 ttttgtgaggttgtgttaggcccaaccacgatttctaatatggtatcagagcctctccaagatccattgggccacctgctatcaggtttccgccatcggg 12330118  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  12330117 ccacccaccatttatgtccac 12330097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 12845975 - 12846031
Alignment:
Q  99 aagatgatattattgagattctcaaaacatcaaaacctgattgggttttctacgatt 155  Q
    |||||||| ||| |||||| |||||||||||||| ||||| ||||||||||| ||||    
T  12845975 aagatgatgttactgagatactcaaaacatcaaaccctgactgggttttctatgatt 12846031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 13353247 - 13353367
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || || |||||||||| |||||||       
T  13353247 ttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcggg 13353346  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  13353347 ccacccaccatttatgtccac 13353367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 33796372 - 33796492
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || || |||||||||| |||||||       
T  33796372 ttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcggg 33796471  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  33796472 ccacccaccatttatgtccac 33796492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 3880074 - 3880125
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||||||||||| |||||||||| || |||||| |||||| ||||||||||    
T  3880074 gttaacttcaccagaaaagtcattctcgtgacttcaccatagaattttccta 3880125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 664 - 703
Target Start/End: Complemental strand, 27993599 - 27993560
Alignment:
Q  664 atcaggttttcgctatcaaaccacctaccatttatatcca 703  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  27993599 atcaggtttccgctatcaagccacctaccatttatatcca 27993560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 30353493 - 30353540
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||| |||||||||| ||||||||| |||||| ||||||    
T  30353493 gttaacttcaccagaaaagtcattctcatgacttcaccatagaatttt 30353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 5627440 - 5627390
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||||||||| | ||||||| ||| || |||||||||    
T  5627440 gttaacttcaccaaaaaagtcattcttatgacttcaccttagaattttcct 5627390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 458
Target Start/End: Complemental strand, 19631797 - 19631748
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||| |||||||||| | ||||||| |||||| |||||||||    
T  19631797 ttaacttcaccagaaaagtcattcttatgacttcaccatagaattttcct 19631748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 21193646 - 21193596
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  21193646 gttaacttcaccagaaaagtcattctcatgactttaccatagaattttcct 21193596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 35844366 - 35844316
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||||||||||||||||||| |||||| |||||||||    
T  35844366 gttaacttcaccagaaaagtcattatcatgacttcaccatagaattttcct 35844316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 593 - 642
Target Start/End: Complemental strand, 29575919 - 29575870
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttca 642  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||||||    
T  29575919 gttgtgttagatccaaccacaatttttaagatggtatcagagcctcttca 29575870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 408 - 457
Target Start/End: Original strand, 51213117 - 51213166
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||||||| ||||||||| |||||| ||||||||    
T  51213117 gttaacttcaccaaaaaagtcattctcatgacttcaccatagaattttcc 51213166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 628 - 704
Target Start/End: Complemental strand, 19954446 - 19954370
Alignment:
Q  628 atcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctaccatttatatccac 704  Q
    ||||||||||||||| ||||| | |||| |  |||||||||||||||||||||  |||||| ||||||||| |||||    
T  19954446 atcagagcctcttcaagatccattgggccatctgctatcaggttttcgctatctgaccacccaccatttatgtccac 19954370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 40552395 - 40552447
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    ||||||||| |||||||||||||| ||||||||| |||||| |||||||||||    
T  40552395 gttaacttctccaaaaaagtcattctcatgacttcaccatagaattttcctat 40552447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 45828065 - 45828185
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||| ||||||||||  || ||||||||||  ||||||  |||||||||||| || ||||| | | || || ||||| ||||||| ||||||| |     
T  45828065 ttttgtgaggttgtgttaggccctaccacaatttctaagatggtatcagagcctctccaagatccattgcgccacctgctaccaggtttccgctatcgag 45828164  T
Q  684 ccacctaccatttatatccac 704  Q
    ||||| ||||||||| |||||    
T  45828165 ccacccaccatttatgtccac 45828185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 42204733 - 42204670
Alignment:
Q  324 acggttttagagttcgagaatgtgaattttggagaagatgaattttgattaaccaagacagtat 387  Q
    ||||| |||| | |||||||| |||||||||||||||||||||||||||| | |||||| ||||    
T  42204733 acggtgttaggggtcgagaatatgaattttggagaagatgaattttgattgagcaagacggtat 42204670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 38392628 - 38392673
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattt 454  Q
    ||||||||||||||||||||||| ||||||||| |||||| |||||    
T  38392628 ttaacttcaccaaaaaagtcattctcatgacttcaccatataattt 38392673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 40640634 - 40640683
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||| |||||||||| ||||||||| |||||| |||||||||    
T  40640634 ttaacttcaccagaaaagtcattctcatgacttcaccatagaattttcct 40640683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 42665541 - 42665590
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||||||| |||||||||| |||| |||||| |||||||||    
T  42665541 ttaacttcaccaaaaaaatcattatcataacttcaccatagaattttcct 42665590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 466
Target Start/End: Original strand, 49359628 - 49359685
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctatatataa 466  Q
    |||||||||| |||||||||||| ||||||||| |||||| ||||||||  |||||||    
T  49359628 ttaacttcacaaaaaaagtcattttcatgacttcaccatagaattttccattatataa 49359685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 456
Target Start/End: Original strand, 11835742 - 11835790
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttc 456  Q
    |||||||||||||||||| ||||| ||||||||| |||||| |||||||    
T  11835742 gttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttc 11835790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 408 - 460
Target Start/End: Original strand, 26941396 - 26941448
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcctat 460  Q
    |||||||||||||||||| ||||| | ||||||| |||||| |||||||||||    
T  26941396 gttaacttcaccaaaaaaatcattcttatgacttcaccatagaattttcctat 26941448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Original strand, 3655338 - 3655389
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||| | ||||||||||||| | ||||||| |||||||||||||||||    
T  3655338 gttaactttatcaaaaaagtcatttttatgacttcaccataaaattttccta 3655389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 455
Target Start/End: Original strand, 46297898 - 46297945
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    ||||||||||||| |||||||||| ||||||||| |||||| ||||||    
T  46297898 gttaacttcaccagaaaagtcattttcatgacttcaccatagaatttt 46297945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 459
Target Start/End: Original strand, 7327620 - 7327670
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    |||||||||| |||||||||||| |||| |||| |||||| ||||||||||    
T  7327620 ttaacttcactaaaaaagtcattctcataacttcaccatagaattttccta 7327670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 660 - 706
Target Start/End: Original strand, 21888527 - 21888573
Alignment:
Q  660 tgctatcaggttttcgctatcaaaccacctaccatttatatccacac 706  Q
    ||||||||||||| |||||||  |||||| |||||||||||||||||    
T  21888527 tgctatcaggtttccgctatcggaccacccaccatttatatccacac 21888573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 48354981 - 48354931
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    ||||||||||||| |||| ||||| ||||||||| |||||| |||||||||    
T  48354981 gttaacttcaccataaaaatcattctcatgacttcaccatagaattttcct 48354931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 53818509 - 53818555
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaatttt 455  Q
    |||||||||||| |||| ||||| ||||||||| |||||||||||||    
T  53818509 ttaacttcaccagaaaaatcattctcatgacttcaccataaaatttt 53818555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 23165838 - 23165883
Alignment:
Q  409 ttaacttcaccaaaaaagtcattatcatgactttaccataaaattt 454  Q
    |||||||||| |||||| ||||||||||||||| |||||| |||||    
T  23165838 ttaacttcactaaaaaaatcattatcatgacttcaccatagaattt 23165883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 45174543 - 45174494
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcc 457  Q
    |||||||||||||||||||| ||| |||  |||| |||||||||||||||    
T  45174543 gttaacttcaccaaaaaagttattctcacaacttcaccataaaattttcc 45174494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 593 - 704
Target Start/End: Complemental strand, 5783 - 5672
Alignment:
Q  593 gttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaaccacctacc 692  Q
    ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | | || || ||||||||||||| |||||||  |||||| |||    
T  5783 gttgtgttaggcccaaccacgatttctaagatggtatcagagcctctccaagatccattgagccacctgctatcaggtttccgctatcggaccacccacc 5684  T
Q  693 atttatatccac 704  Q
    |||||| |||||    
T  5683 atttatgtccac 5672  T

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Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 584 - 698
Target Start/End: Original strand, 5701 - 5815
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||| |||||||| ||||  ||||||  |||||||||||||||  |||| | |||| || ||||||||||||| || |||| ||    
T  5701 ttttgtggggttgtgttagacccaaccacgatttctaagatggtatcagagcctcttcaaaatccattgggccacctgctatcaggtttccgttatcgaa 5800  T
Q  684 ccacctaccatttat 698  Q
     |||| ||| |||||    
T  5801 tcacccaccgtttat 5815  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 408 - 458
Target Start/End: Complemental strand, 100870 - 100820
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||| ||||| ||||||||| |||||| |||||||||    
T  100870 gttaacttcaccaaaaaaatcattctcatgacttcaccatagaattttcct 100820  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 42397 - 42346
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||||||||||| |||| | ||| ||||||||| |||||||||||||||||    
T  42397 gttaacttcaccagaaaaattattctcatgacttcaccataaaattttccta 42346  T

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Target: scaffold0519 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 584 - 704
Target Start/End: Original strand, 1962 - 2082
Alignment:
Q  584 ttttgtgaagttgtgttagatccaaccacaattttgaagatgtcatcagagcctcttcaggatccgtcgggctacttgctatcaggttttcgctatcaaa 683  Q
    |||||||  ||||||||||  |||||||| ||||  ||||||  |||||||||||| || ||||| | |||| || || |||||||||| ||||||| |     
T  1962 ttttgtggggttgtgttaggcccaaccaccatttctaagatggtatcagagcctctccaagatccattgggccacctgttatcaggtttccgctatcgag 2061  T
Q  684 ccacctaccatttatatccac 704  Q
     |||| ||||||||| |||||    
T  2062 tcacccaccatttatgtccac 2082  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 459
Target Start/End: Complemental strand, 183 - 132
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttccta 459  Q
    ||||||||||||| |||||||||| || |||||| |||||| ||||||||||    
T  183 gttaacttcaccagaaaagtcattttcgtgacttcaccatagaattttccta 132  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 408705 - 408755
Alignment:
Q  408 gttaacttcaccaaaaaagtcattatcatgactttaccataaaattttcct 458  Q
    |||||||||||||||||| ||||| | ||||||| |||||| |||||||||    
T  408705 gttaacttcaccaaaaaaatcatttttatgacttcaccatagaattttcct 408755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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