View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16422_low_4 (Length: 589)
Name: NF16422_low_4
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 574
Target Start/End: Original strand, 25426872 - 25427456
Alignment:
| Q |
11 |
catcatcatcaatgcatcgatcaatcaacttaacacaacccacatacttcaataagcatgccaagaaaattaatggtaaatgtaaatcaattttactctt |
110 |
Q |
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| T |
25426872 |
catcaacatcaatgcatcgatcaatcaacttaacacaacccacatacttcaataagcatgccaatcaaattaatggtaaatgtaaatcaattttactctt |
25426971 |
T |
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| Q |
111 |
acaattcaatgagtcctccattcttttaaaaccattacaccaattttaaaatgcaattacaaaagagggttgatgtatcaaaactcaggatagttattgg |
210 |
Q |
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| T |
25426972 |
aacattcaacgagtcctccattcttttaaaaccattacaccaattttaaaatgcaattacaaaagagggttgatgtatcaaaactcaggatagttattgg |
25427071 |
T |
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| Q |
211 |
atgtaagtgtaatcgtaattaacattgatttacacatacactaaacatctgtaaaatccttcaaaacattttcactagagtataactatcaacatcaatg |
310 |
Q |
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| T |
25427072 |
atgtaagtgtaatcgtaattaacattgatttatacatacactaaacatctgtaaaatccttcaaaacattttcactagagtataactatcaacatcaatg |
25427171 |
T |
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| Q |
311 |
ccgtcaatcagtaaacttaacacaccctacaagctttaataagcatggcaatcaaattacaaattttaaaacgatcatctatcga--------------- |
395 |
Q |
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| T |
25427172 |
ccgtcaatcagtaaacttaacacaccctacaagctttaataagcatgtcaatcaaattacaaattttaaaacgatcatctatcgaaataatacaagtgta |
25427271 |
T |
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| Q |
396 |
------atttacacattagtattgaatacgagtgtaaaactgattaacactaatttacacatgcagtaaatatcctttaaatctacaacactatacagcc |
489 |
Q |
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| T |
25427272 |
aaactgatttgcacattagtattgaatacaagtgtaaaactgattaatactaatttacacatgcagtaaatatcctttaaatctacaacactatacagcc |
25427371 |
T |
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| Q |
490 |
tgttaattatatttatatcattcatggtactaaattattccgcaaatctacatcgccatttcaatcattcaattaatttcaatat |
574 |
Q |
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| T |
25427372 |
tgttaattatatttatatcaatcatggtactaaattattcggcaaatctacatcgccatttcaatcattcaattaatttcaatat |
25427456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 369
Target Start/End: Original strand, 25426848 - 25426943
Alignment:
| Q |
273 |
aaaacattttcactagagtataactatcaacatcaatgccgtcaatcagtaaacttaacacaccctacaagctttaataagcatggcaatcaaatta |
369 |
Q |
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| T |
25426848 |
aaaacactttcactagagaataaccatcaacatcaatg-catcgatcaatcaacttaacacaacccacatacttcaataagcatgccaatcaaatta |
25426943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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