View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16422_low_5 (Length: 586)

Name: NF16422_low_5
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16422_low_5
NF16422_low_5
[»] chr5 (16 HSPs)
chr5 (18-576)||(6120846-6121396)
chr5 (250-560)||(6133851-6134156)
chr5 (425-576)||(6134164-6134311)
chr5 (153-305)||(6140502-6140654)
chr5 (153-305)||(9884774-9884925)
chr5 (192-305)||(9886546-9886659)
chr5 (148-307)||(33800449-33800608)
chr5 (211-307)||(33729332-33729428)
chr5 (68-144)||(6132620-6132695)
chr5 (146-226)||(6132724-6132804)
chr5 (211-285)||(6153778-6153852)
chr5 (145-278)||(6147469-6147602)
chr5 (146-273)||(6128275-6128402)
chr5 (461-516)||(6140801-6140856)
chr5 (67-139)||(33729527-33729599)
chr5 (67-139)||(33800644-33800716)
[»] chr3 (1 HSPs)
chr3 (153-307)||(7915611-7915765)


Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Original strand, 6120846 - 6121396
Alignment:
Q  18 accatatgccaggtgagaccaattacatgtttcacaatta-ttatcttaatataaaaattgacacctctattctaacgagctgattttgtacgaacgtgg 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6120846 accatatgccaggtgagaccaattacatgtttcacaattaattatcttaatataaaaattgacacctctattctaacgagctgattttgtacgaacgtgg 6120945  T
Q  117 tgaactaaatattaaaatcctaacatatattttttgtgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatattt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6120946 tgaactaaatattaaaatcctaacatatattttttgtgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatattt 6121045  T
Q  217 catcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgaggatgcataattgc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6121046 catcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgaggatgcataattgc 6121145  T
Q  317 ttgatgttgcctcaaaattttattttgttatcagtattaag---aatgtctcttcgaatgatgttttcgtatcctgctttatctctttttaataattgaa 413  Q
    ||||||||||||   || |||||||||||||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6121146 ttgatgttgcct--gaactttattttgttatcagtattaagaataatgtctcttcgaatgatgttttcttatcctgctttatctctttttaataattgaa 6121243  T
Q  414 ggannnnnnnnatgatgtaatttggtttacatgatgaaaaagtcgtcccaaacaatatatattttaccgttttgtttgaatcagttacatgataagtgag 513  Q
    |||        ||||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||     |||||||||    
T  6121244 ggattttttttatgatgtaatttggtttacatgatg-aaaagtcatcccaaacagtatacattttaccgttttgtttgaatcagtt-----ataagtgag 6121337  T
Q  514 ttagagagagaaatcacttagacaataatattgatcacctcttttttatattgttatcctatg 576  Q
    ||    | ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  6121338 tt----atagacatcacttagacaataatattgctcacctcttttttatattgttatcttatg 6121396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 250 - 560
Target Start/End: Original strand, 6133851 - 6134156
Alignment:
Q  250 aggaatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgaggatgcataattgcttgatgttgcctcaaaattttattttgttatca 349  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  6133851 aggaatgtttgtccaatctgtaaggagacagctctggaagttgatgaagatgaggatgcataattgcttgatgttgcctcaaaactttattttgttatta 6133950  T
Q  350 gtattaagaatgtctcttcgaatgatgttttcgtatcctgctttatctctttttaataattgaaggannnnnnnnatgatgtaatttggtttacatgatg 449  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  6133951 gtattaagaatgtctcttcgaatgatgttttcttatcctgctttatctctttttaataattgaaggattttttttatgatgtaatttggtttacatgatg 6134050  T
Q  450 aaaaagtcgtcccaaacaatatatattttaccgttttgtttgaatcagttacatgataagtgagttagagagagaaatcacttagacaataatattgatc 549  Q
     ||||||| ||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||||    | ||| ||||||||||||||||||||| ||    
T  6134051 -aaaagtcatcccaaacagtatacattttaccgttttgtttgaatcagttgcattataagtgagtt----atagacatcacttagacaataatattgctc 6134145  T
Q  550 acctctttttt 560  Q
    |||||||||||    
T  6134146 acctctttttt 6134156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 425 - 576
Target Start/End: Original strand, 6134164 - 6134311
Alignment:
Q  425 atgatgtaatttggtttacatgatgaaaaagtcgtcccaaacaatatatattttaccgttttgtttgaatcagttacatgataagtgagttagagagaga 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  6134164 atgatgtaatttggtttacatgatgaaaaagtcgtcccaaacaatatatattttaccgttttgtttgaatcagttacatgataagtgagtt----agaga 6134259  T
Q  525 aatcacttagacaataatattgatcacctcttttttatattgttatcctatg 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6134260 aatcacttagacaataatattgatcacctcttttttatattgttatcttatg 6134311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 153 - 305
Target Start/End: Original strand, 6140502 - 6140654
Alignment:
Q  153 tgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatatttcatcttgactgcatcaaacaatggttggagctgagg 252  Q
    |||||||||||| ||||||||| |||| ||||  || || ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||  ||| |    
T  6140502 tgtttattaggaggactatgtgaagggcgagagaatcggcagacttgattgtatgcatatctttcatcttgactgcatcaaacaatggctggaattgaag 6140601  T
Q  253 aatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgagga 305  Q
    ||||| ||||||||||| ||  ||||||| || ||||||||||||||||||||    
T  6140602 aatgtctgtccaatctgcaaccagacagcgctagaaattgatgaagatgagga 6140654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 9884925 - 9884774
Alignment:
Q  153 tgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatatttcatcttgactgcatcaaacaatggttggagctgagg 252  Q
    |||||||||||| |||||||||||||| ||||   |||||| |||||||||| || |||| ||||||||||||||||||||||||||||||||| ||| |    
T  9884925 tgtttattaggaggactatgtggagggcgagagagttggta-acttgattgtgtgcatatctttcatcttgactgcatcaaacaatggttggagttgaag 9884827  T
Q  253 aatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgagga 305  Q
    ||| | ||||||||| | ||| ||||||| || | |||||| |||||||||||    
T  9884826 aatttatgtccaatccgcaagcagacagcgctaggaattgaggaagatgagga 9884774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 9886546 - 9886659
Alignment:
Q  192 tagacttgattgtatggatatatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctggaaatt 291  Q
    |||||||||| || || |||| ||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||| ||||||| || ||| ||    
T  9886546 tagacttgatcgtgtgcatatctttcatcttgactgcatcaaacaatggttggagttgaagaatgtctgtccaatctgcaagcagacagcgctagaagtt 9886645  T
Q  292 gatgaagatgagga 305  Q
    ||||||||||||||    
T  9886646 gatgaagatgagga 9886659  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 33800608 - 33800449
Alignment:
Q  148 ttttgtgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatatttcatcttgactgcatcaaacaatggttggagc 247  Q
    |||| ||||||||||||||| | | | || ||||||   ||||| ||||||||||| |   | |||| ||||||| |||||||||||||||||||||||     
T  33800608 ttttatgtttattaggaagattttattgatggggagtgtattgggagacttgattgcaatcacatatatcatcttaactgcatcaaacaatggttggagg 33800509  T
Q  248 tgaggaatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgaggatg 307  Q
     || |||||||||||||||||||||| | || |||||| | ||| |||||||||| ||||    
T  33800508 agaagaatgtttgtccaatctgtaagaacactgctctgaacatttatgaagatgatgatg 33800449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 33729428 - 33729332
Alignment:
Q  211 atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgaggatg 307  Q
    |||| ||||||| |||||||||||||||||||||||  || |||||||||||||||||||||| |||| | |||| | ||| |||||||||| ||||    
T  33729428 atatatcatcttaactgcatcaaacaatggttggaggagaagaatgtttgtccaatctgtaagaagactgatctgaacatttatgaagatgatgatg 33729332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 6132620 - 6132695
Alignment:
Q  68 ataaaaattgacacctctattctaacgagctgattttgtacgaacgtggtgaactaaatattaaaatcctaacatat 144  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||| ||||    
T  6132620 ataaaaagtgacacc-ctattctaacgagctgattttgtacgaatgaggtgaactacatattaaaatcgtaatatat 6132695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 6132724 - 6132804
Alignment:
Q  146 ttttttgtgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatatttcatcttgact 226  Q
    |||||| |||||||||||||||| ||||| |||||||||  ||||| ||||||||||||||| |||| |||||||| ||||    
T  6132724 ttttttttgtttattaggaagaccatgtgaagggggagagaattggaagacttgattgtatgcatatctttcatctagact 6132804  T

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Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 6153778 - 6153852
Alignment:
Q  211 atatttcatcttgactgcatcaaacaatggttggagctgaggaatgtttgtccaatctgtaaggagacagctctg 285  Q
    |||| |||||||||||||||||  |||||||||||| | | ||||||||||||| |||||||||||| |||||||    
T  6153778 atatatcatcttgactgcatcagccaatggttggaggtcaagaatgtttgtccagtctgtaaggagatagctctg 6153852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 6147469 - 6147602
Alignment:
Q  145 attttttgtgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatatttcatcttgactgcatcaaacaatggttgg 244  Q
    ||||||| ||||||||||||||| ||| | || |||||| | ||||| |||||| ||||||   | | || |||| |||| |||||| ||||||||||||    
T  6147469 attttttttgtttattaggaagattatattgatggggagcatattggaagacttaattgtactcacacatatcattttgattgcatcgaacaatggttgg 6147568  T
Q  245 agctgaggaatgtttgtccaatctgtaaggagac 278  Q
     | ||| ||||||||||||| |||||||| ||||    
T  6147569 gggtgaagaatgtttgtccagtctgtaagaagac 6147602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 146 - 273
Target Start/End: Original strand, 6128275 - 6128402
Alignment:
Q  146 ttttttgtgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatatttcatcttgactgcatcaaacaatggttgga 245  Q
    |||||| ||||||||||||||| ||| | || |||||| | ||||| |||||| | || |   | |||| ||||||||| ||||||||||||||||| ||    
T  6128275 ttttttttgtttattaggaagattatattgatggggagcatattggaagacttcactgcactcacatatatcatcttgattgcatcaaacaatggtttga 6128374  T
Q  246 gctgaggaatgtttgtccaatctgtaag 273  Q
    | ||| ||||| ||||||| ||||||||    
T  6128375 ggtgaagaatgcttgtccattctgtaag 6128402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 516
Target Start/End: Original strand, 6140801 - 6140856
Alignment:
Q  461 ccaaacaatatatattttaccgttttgtttgaatcagttacatgataagtgagtta 516  Q
    ||||||||||||||||||||||||  |||||||| |||| ||||||||||||||||    
T  6140801 ccaaacaatatatattttaccgttccgtttgaattagttgcatgataagtgagtta 6140856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 33729599 - 33729527
Alignment:
Q  67 tataaaaattgacacctctattctaacgagctgattttgtacgaacgtggtgaactaaatattaaaatcctaa 139  Q
    |||||||| || ||||||||||||||| | ||||||||||| | |   | |||||||||| ||||||||||||    
T  33729599 tataaaaagtggcacctctattctaaccaactgattttgtaaggattggatgaactaaattttaaaatcctaa 33729527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 33800716 - 33800644
Alignment:
Q  67 tataaaaattgacacctctattctaacgagctgattttgtacgaacgtggtgaactaaatattaaaatcctaa 139  Q
    |||||||| || ||||||||||||||| | ||||||||||| | |   | |||||||||| ||||||||||||    
T  33800716 tataaaaagtggcacctctattctaaccaactgattttgtaaggattggatgaactaaattttaaaatcctaa 33800644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 153 - 307
Target Start/End: Complemental strand, 7915765 - 7915611
Alignment:
Q  153 tgtttattaggaagactatgtggagggggagaagattggtagacttgattgtatggatatatttcatcttgactgcatcaaacaatggttggagctgagg 252  Q
    ||||||||||||||||| |||||| |||||||  |||||||||||| | || ||  || | | ||||||| ||||||||||||||||||||||| |||||    
T  7915765 tgtttattaggaagactttgtggatggggagagtattggtagacttaactgcatacatgtttatcatcttcactgcatcaaacaatggttggagatgagg 7915666  T
Q  253 aatgtttgtccaatctgtaaggagacagctctggaaattgatgaagatgaggatg 307  Q
    |||| |||||| || |||||| | | || | |||||||| |||||||||||||||    
T  7915665 aatgcttgtcctatttgtaagaaaagaggtttggaaattaatgaagatgaggatg 7915611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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