View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16422_low_6 (Length: 502)
Name: NF16422_low_6
Description: NF16422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16422_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 174 - 361
Target Start/End: Complemental strand, 36621286 - 36621099
Alignment:
| Q |
174 |
ttaataaatatttaattttgaagactaaaaatcatagcatcaagtcataatttttcaaccttaatcctcagtatttctaaatcaaaaccatcaagatagc |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36621286 |
ttaataaatatttaattttgaagactaaaaatcatagcatcaagtcataatttttcaaccttaatcctcagtatttctaaatcaaaaccatcaagatagc |
36621187 |
T |
|
| Q |
274 |
caacctaaaacctatctttaagctgtgtagagtgattgaaaacacacacaataatacacccaattattaagactaacttttgtttaaa |
361 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36621186 |
caacctaaaacctatctttaagttgcgtagagtgattaaaaacacacacaataatacacccaattattaagactaacttttgtttaaa |
36621099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 353 - 486
Target Start/End: Complemental strand, 36620444 - 36620311
Alignment:
| Q |
353 |
ttgtttaaaagtcttctttaattacttgtagtgtaaaattatggaacatttttcgttgtttcaaaagttgtaagtcaaccacctcaaaattgtaggctct |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36620444 |
ttgtttaaaagtcttctttaattacttgtagtgtaaaattatggaacatttctcgttgtttcaaaagttgtaagtcaaccacctcaaaattgtaggctct |
36620345 |
T |
|
| Q |
453 |
tccgactaactaactagtagtatcattatttaaa |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36620344 |
tccgactaactaactagtagtatcattatttaaa |
36620311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University